7mz4: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 7mz4 is ~~ON HOLD until Paper Publication~~

==Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP==

== Structural highlights ==

<table><tr><td colspan='2'>[[7mz4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MZ4 OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=7MZ4 FirstGlance].

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.076Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1FZ:5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]THYMIDINE'>1FZ</scene>, <scene name='pdbligand=DZM:3-DEAZA-3-METHYLADENINE'>DZM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=7mz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mz4 OCA], [https://pdbe.org/7mz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mz4 RCSB], [https://www.ebi.ac.uk/pdbsum/7mz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mz4 ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/DPOLB_HUMAN DPOLB_HUMAN] Repair polymerase that plays a key role in base-excision repair. Has 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity that removes the 5' sugar phosphate and also acts as a DNA polymerase that adds one nucleotide to the 3' end of the arising single-nucleotide gap. Conducts 'gap-filling' DNA synthesis in a stepwise distributive fashion rather than in a processive fashion as for other DNA polymerases.<ref>PMID:9207062</ref> <ref>PMID:9572863</ref> <ref>PMID:11805079</ref> <ref>PMID:21362556</ref>

~~Authors: Koag, M.-C., Lee, S.~~

==See Also==

*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]

~~Description: Structure of human~~ DNA polymerase ~~beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP~~

== References ==

[[Category: ~~Unreleased Structures~~]]

[[Category: ~~Lee, S~~]]

__TOC__

[[Category: Koag, M.-C]]

</StructureSection>

[[Category: Homo sapiens]]

[[Category: Large Structures]]

[[Category: Koag M-C]]

[[Category: Lee S]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 7mz4 is ON HOLD  until Paper Publication
+==Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP==
+<StructureSection load='7mz4' size='340' side='right'caption='[[7mz4]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[7mz4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MZ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MZ4 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.076&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1FZ:5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]THYMIDINE'>1FZ</scene>, <scene name='pdbligand=DZM:3-DEAZA-3-METHYLADENINE'>DZM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mz4 OCA], [https://pdbe.org/7mz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mz4 RCSB], [https://www.ebi.ac.uk/pdbsum/7mz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mz4 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPOLB_HUMAN DPOLB_HUMAN] Repair polymerase that plays a key role in base-excision repair. Has 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity that removes the 5' sugar phosphate and also acts as a DNA polymerase that adds one nucleotide to the 3' end of the arising single-nucleotide gap. Conducts 'gap-filling' DNA synthesis in a stepwise distributive fashion rather than in a processive fashion as for other DNA polymerases.<ref>PMID:9207062</ref> <ref>PMID:9572863</ref> <ref>PMID:11805079</ref> <ref>PMID:21362556</ref>
-Authors: Koag, M.-C., Lee, S.
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-Description: Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
-[[Category: Lee, S]]
+__TOC__
-[[Category: Koag, M.-C]]
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Koag M-C]]
+[[Category: Lee S]]