5loq: Difference between revisions

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<StructureSection load='5loq' size='340' side='right'caption='[[5loq]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
<StructureSection load='5loq' size='340' side='right'caption='[[5loq]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5loq]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_monocytogenes_hominis"_nyfeldt_1932 "bacterium monocytogenes hominis" nyfeldt 1932]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LOQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[5loq]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LOQ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FEC:1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC+ACID+FERROUS+COMPLEX'>FEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.69&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lmo2113 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 "Bacterium monocytogenes hominis" Nyfeldt 1932])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FEC:1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC+ACID+FERROUS+COMPLEX'>FEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5loq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5loq OCA], [http://pdbe.org/5loq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5loq RCSB], [http://www.ebi.ac.uk/pdbsum/5loq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5loq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5loq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5loq OCA], [https://pdbe.org/5loq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5loq RCSB], [https://www.ebi.ac.uk/pdbsum/5loq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5loq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Y2113_LISMO Y2113_LISMO]] May function as heme-dependent peroxidase.  
[https://www.uniprot.org/uniprot/CHDC_LISMO CHDC_LISMO] Involved in coproporphyrin-dependent heme b biosynthesis (PubMed:27758026, PubMed:31423350). Catalyzes the decarboxylation of Fe-coproporphyrin III (coproheme) to heme b (protoheme IX), the last step of the pathway (PubMed:27758026, PubMed:31423350, PubMed:29536725). The reaction occurs in a stepwise manner with a three-propionate intermediate (PubMed:27758026, PubMed:31423350).<ref>PMID:27758026</ref> <ref>PMID:29536725</ref> <ref>PMID:31423350</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacterium monocytogenes hominis nyfeldt 1932]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Djinovic-Carugo, K]]
[[Category: Listeria monocytogenes]]
[[Category: Hofbauer, S]]
[[Category: Djinovic-Carugo K]]
[[Category: Mlynek, G]]
[[Category: Hofbauer S]]
[[Category: Obinger, C]]
[[Category: Mlynek G]]
[[Category: Puehringer, D]]
[[Category: Obinger C]]
[[Category: Coproheme]]
[[Category: Puehringer D]]
[[Category: Gram-positive pathogen]]
[[Category: Heme b]]
[[Category: Heme biosynthesis]]
[[Category: Hemq]]
[[Category: Oxidoreductase]]
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