1vbm: Difference between revisions

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<StructureSection load='1vbm' size='340' side='right'caption='[[1vbm]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='1vbm' size='340' side='right'caption='[[1vbm]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1vbm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VBM FirstGlance]. <br>
<table><tr><td colspan='2'>[[1vbm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VBM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YSA:5-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE'>YSA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1udf|1udf]], [[1udj|1udj]], [[1vbn|1vbn]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YSA:5-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE'>YSA</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Tyrosine--tRNA_ligase Tyrosine--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.1 6.1.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vbm OCA], [https://pdbe.org/1vbm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vbm RCSB], [https://www.ebi.ac.uk/pdbsum/1vbm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vbm ProSAT], [https://www.topsan.org/Proteins/RSGI/1vbm TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vbm OCA], [https://pdbe.org/1vbm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vbm RCSB], [https://www.ebi.ac.uk/pdbsum/1vbm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vbm ProSAT], [https://www.topsan.org/Proteins/RSGI/1vbm TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/SYY_ECOLI SYY_ECOLI]] Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).[HAMAP-Rule:MF_02006]  
[https://www.uniprot.org/uniprot/SYY_ECOLI SYY_ECOLI] Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).[HAMAP-Rule:MF_02006]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus coli migula 1895]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Tyrosine--tRNA ligase]]
[[Category: Kamata K]]
[[Category: Kamata, K]]
[[Category: Kobayashi T]]
[[Category: Kobayashi, T]]
[[Category: Nishimura S]]
[[Category: Nishimura, S]]
[[Category: Sakamoto K]]
[[Category: Structural genomic]]
[[Category: Sekine R]]
[[Category: Sakamoto, K]]
[[Category: Takimura T]]
[[Category: Sekine, R]]
[[Category: Yokoyama S]]
[[Category: Takimura, T]]
[[Category: Yokoyama, S]]
[[Category: Ligase]]
[[Category: Rsgi]]
Retrieved from "https://proteopedia.org/1vbm"