2dcm: Difference between revisions

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<StructureSection load='2dcm' size='340' side='right'caption='[[2dcm]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
<StructureSection load='2dcm' size='340' side='right'caption='[[2dcm]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2dcm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCM FirstGlance]. <br>
<table><tr><td colspan='2'>[[2dcm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GA0:GLYCYLALANYL-N-2-NAPHTHYL-L-PROLINEAMIDE'>GA0</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2d5l|2d5l]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GA0:GLYCYLALANYL-N-2-NAPHTHYL-L-PROLINEAMIDE'>GA0</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PG1361 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcm OCA], [https://pdbe.org/2dcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcm RCSB], [https://www.ebi.ac.uk/pdbsum/2dcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcm OCA], [https://pdbe.org/2dcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcm RCSB], [https://www.ebi.ac.uk/pdbsum/2dcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/PTP_PORGI PTP_PORGI]] Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position.<ref>PMID:10092598</ref>
[https://www.uniprot.org/uniprot/PTP_PORGI PTP_PORGI] Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position.<ref>PMID:10092598</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Porgi]]
[[Category: Porphyromonas gingivalis W83]]
[[Category: Ito, K]]
[[Category: Ito K]]
[[Category: Nakajima, Y]]
[[Category: Nakajima Y]]
[[Category: Onohara, Y]]
[[Category: Onohara Y]]
[[Category: Xu, Y]]
[[Category: Xu Y]]
[[Category: Yamada, N]]
[[Category: Yamada N]]
[[Category: Yoshimoto, T]]
[[Category: Yoshimoto T]]
[[Category: Hydrolase]]
[[Category: Peptidase family s9]]
[[Category: Prolyl oligopeptidase family]]
[[Category: Serine peptidase]]
[[Category: Site-directed mutangenesis]]
Retrieved from "https://proteopedia.org/2dcm"