3g5r: Difference between revisions

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<StructureSection load='3g5r' size='340' side='right'caption='[[3g5r]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='3g5r' size='340' side='right'caption='[[3g5r]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3g5r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G5R FirstGlance]. <br>
<table><tr><td colspan='2'>[[3g5r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G5R FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=THG:(6S)-5,6,7,8-TETRAHYDROFOLATE'>THG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3g5q|3g5q]], [[3g5s|3g5s]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=THG:(6S)-5,6,7,8-TETRAHYDROFOLATE'>THG</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmFO, TTHA1442 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase_(FADH(2)-oxidizing) Methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.74 2.1.1.74] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g5r OCA], [https://pdbe.org/3g5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g5r RCSB], [https://www.ebi.ac.uk/pdbsum/3g5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g5r ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g5r OCA], [https://pdbe.org/3g5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g5r RCSB], [https://www.ebi.ac.uk/pdbsum/3g5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g5r ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/TRMFO_THET8 TRMFO_THET8]] Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs (By similarity).  
[https://www.uniprot.org/uniprot/TRMFO_THET8 TRMFO_THET8] Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Thet8]]
[[Category: Thermus thermophilus HB8]]
[[Category: Hori, H]]
[[Category: Hori H]]
[[Category: Ishitani, R]]
[[Category: Ishitani R]]
[[Category: Nishimasu, H]]
[[Category: Nishimasu H]]
[[Category: Nureki, O]]
[[Category: Nureki O]]
[[Category: Fad]]
[[Category: Flavoprotein]]
[[Category: Methyltransferase]]
[[Category: Transferase]]
[[Category: Trna methyltransferase fad folate]]
[[Category: Trna processing]]
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