3l87: Difference between revisions

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<StructureSection load='3l87' size='340' side='right'caption='[[3l87]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3l87' size='340' side='right'caption='[[3l87]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3l87]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strmu Strmu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L87 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3l87]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans_UA159 Streptococcus mutans UA159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L87 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">smu.143c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210007 STRMU])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l87 OCA], [https://pdbe.org/3l87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l87 RCSB], [https://www.ebi.ac.uk/pdbsum/3l87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l87 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l87 OCA], [https://pdbe.org/3l87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l87 RCSB], [https://www.ebi.ac.uk/pdbsum/3l87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l87 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/DEF_STRMU DEF_STRMU]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).  
[https://www.uniprot.org/uniprot/DEF_STRMU DEF_STRMU] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Peptide deformylase]]
[[Category: Streptococcus mutans UA159]]
[[Category: Strmu]]
[[Category: Cao Q]]
[[Category: Cao, Q]]
[[Category: Liu X]]
[[Category: Liu, X]]
[[Category: Su X-D]]
[[Category: Su, X D]]
[[Category: Def]]
[[Category: Hydrolase]]
[[Category: Iron]]
[[Category: Metal-binding]]
[[Category: Protein biosynthesis]]

Latest revision as of 16:21, 1 November 2023

The Crystal Structure of smu.143c from Streptococcus mutans UA159

3l87, resolution 2.00Å

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