5yz7: Difference between revisions

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==Crystal structure of OsD14 in complex with D-ring-opened 7'-carba-4BD==
==Crystal structure of OsD14 in complex with D-ring-opened 7'-carba-4BD==
<StructureSection load='5yz7' size='340' side='right' caption='[[5yz7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='5yz7' size='340' side='right'caption='[[5yz7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5yz7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YZ7 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5yz7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YZ7 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=94X:(2Z,4S)-5-(4-bromophenyl)-4-hydroxy-2-methylpent-2-enoic+acid'>94X</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.898&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vxk|3vxk]], [[3wio|3wio]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=94X:(2Z,4S)-5-(4-bromophenyl)-4-hydroxy-2-methylpent-2-enoic+acid'>94X</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D14, D88, HTD2, Os03g0203200, LOC_Os03g10620 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yz7 OCA], [https://pdbe.org/5yz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yz7 RCSB], [https://www.ebi.ac.uk/pdbsum/5yz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yz7 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yz7 OCA], [http://pdbe.org/5yz7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yz7 RCSB], [http://www.ebi.ac.uk/pdbsum/5yz7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yz7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/D14_ORYSJ D14_ORYSJ]] Involved in strigolactone signaling pathway. May function downstream of strigolactone synthesis, as a component of hormone signaling or as an enzyme that participates in the conversion of strigolactones to the bioactive form. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds.<ref>PMID:19542179</ref> <ref>PMID:23301669</ref>
[https://www.uniprot.org/uniprot/D14_ORYSJ D14_ORYSJ] Involved in strigolactone signaling pathway. May function downstream of strigolactone synthesis, as a component of hormone signaling or as an enzyme that participates in the conversion of strigolactones to the bioactive form. Strigolactones are hormones that inhibit tillering and shoot branching through the MAX-dependent pathway, contribute to the regulation of shoot architectural response to phosphate-limiting conditions and function as rhizosphere signal that stimulates hyphal branching of arbuscular mycorrhizal fungi and trigger seed germination of root parasitic weeds.<ref>PMID:19542179</ref> <ref>PMID:23301669</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Japanese rice]]
[[Category: Large Structures]]
[[Category: Asami, T]]
[[Category: Oryza sativa Japonica Group]]
[[Category: Hirabayashi, K]]
[[Category: Asami T]]
[[Category: Jiang, K]]
[[Category: Hirabayashi K]]
[[Category: Miyakawa, T]]
[[Category: Jiang K]]
[[Category: Tanokura, M]]
[[Category: Miyakawa T]]
[[Category: Xu, Y]]
[[Category: Tanokura M]]
[[Category: Hydrolase]]
[[Category: Xu Y]]
[[Category: Plant hormone]]
[[Category: Plant signalling]]
[[Category: Receptor]]
[[Category: Strigolactone]]
Retrieved from "https://proteopedia.org/5yz7"