6jo3: Difference between revisions

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<StructureSection load='6jo3' size='340' side='right'caption='[[6jo3]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
<StructureSection load='6jo3' size='340' side='right'caption='[[6jo3]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6jo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theac Theac]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5b69 5b69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JO3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6jo3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5b69 5b69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JO3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1GP:SN-GLYCEROL-1-PHOSPHATE'>1GP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mm1|4mm1]], [[2f6x|2f6x]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1GP:SN-GLYCEROL-1-PHOSPHATE'>1GP</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ta0995 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo3 OCA], [https://pdbe.org/6jo3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jo3 RCSB], [https://www.ebi.ac.uk/pdbsum/6jo3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo3 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerol_geranylgeranyltransferase Phosphoglycerol geranylgeranyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.41 2.5.1.41] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo3 OCA], [http://pdbe.org/6jo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jo3 RCSB], [http://www.ebi.ac.uk/pdbsum/6jo3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/GGGPS_THEAC GGGPS_THEAC]] Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Cannot use sn-glycerol-3-phosphate (G3P) as substrate.<ref>PMID:12801917</ref> <ref>PMID:24684232</ref>
[https://www.uniprot.org/uniprot/GGGPS_THEAC GGGPS_THEAC] Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Cannot use sn-glycerol-3-phosphate (G3P) as substrate.<ref>PMID:12801917</ref> <ref>PMID:24684232</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Phosphoglycerol geranylgeranyltransferase]]
[[Category: Thermoplasma acidophilum DSM 1728]]
[[Category: Theac]]
[[Category: Miyazono K]]
[[Category: Miyazono, K]]
[[Category: Nemoto N]]
[[Category: Nemoto, N]]
[[Category: Tanokura M]]
[[Category: Tanokura, M]]
[[Category: Yamagishi A]]
[[Category: Yamagishi, A]]
[[Category: Archaea]]
[[Category: Ether lipid]]
[[Category: Structural genomic]]
[[Category: Thermoplasma]]
[[Category: Transferase]]
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