7ffh: Difference between revisions

Latest revision as of 17:15, 29 November 2023

Diarylpentanoid-producing polyketide synthase (N199L mutant)

Structural highlights

7ffh is a 2 chain structure with sequence from Aquilaria sinensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.2Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A385MEG6_9ROSI

Publication Abstract from PubMed

2-(2-Phenylethyl)chromones (PECs) are the principal constituents contributing to the distinctive fragrance of agarwood. How PECs are biosynthesized is currently unknown. In this work, we describe a diarylpentanoid-producing polyketide synthase (PECPS) identified from Aquilaria sinensis. Through biotransformation experiments using fluorine-labeled substrate, transient expression of PECPS in Nicotiana benthamiana, and knockdown of PECPS expression in A. sinensis calli, we demonstrate that the C6-C5-C6 scaffold of diarylpentanoid is the common precursor of PECs, and PECPS plays a crucial role in PECs biosynthesis. Crystal structure (1.98 A) analyses and site-directed mutagenesis reveal that, due to its small active site cavity (247 A(3)), PECPS employs a one-pot formation mechanism including a "diketide-CoA intermediate-released" step for the formation of the C6-C5-C6 scaffold. The identification of PECPS, the pivotal enzyme of PECs biosynthesis, provides insight into not only the feasibility of overproduction of pharmaceutically important PECs using metabolic engineering approaches, but also further exploration of how agarwood is formed.

Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.,Wang XH, Gao BW, Nakashima Y, Mori T, Zhang ZX, Kodama T, Lee YE, Zhang ZK, Wong CP, Liu QQ, Qi BW, Wang J, Li J, Liu X, Abe I, Morita H, Tu PF, Shi SP Nat Commun. 2022 Jan 17;13(1):348. doi: 10.1038/s41467-022-27971-z. PMID:35039506^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Wang XH, Gao BW, Nakashima Y, Mori T, Zhang ZX, Kodama T, Lee YE, Zhang ZK, Wong CP, Liu QQ, Qi BW, Wang J, Li J, Liu X, Abe I, Morita H, Tu PF, Shi SP. Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood. Nat Commun. 2022 Jan 17;13(1):348. doi: 10.1038/s41467-022-27971-z. PMID:35039506 doi:https://dx.doi.org/10.1038/s41467-022-27971-z

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Wang XH, Gao BW, Nakashima Y, Mori T, Zhang ZX, Kodama T, Lee YE, Zhang ZK, Wong CP, Liu QQ, Qi BW, Wang J, Li J, Liu X, Abe I, Morita H, Tu PF, Shi SP. Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood. Nat Commun. 2022 Jan 17;13(1):348. doi: 10.1038/s41467-022-27971-z. PMID:35039506 doi:https://dx.doi.org/10.1038/s41467-022-27971-z

[1]

@@ Line 3: / Line 3: @@
 <StructureSection load='7ffh' size='340' side='right'caption='[[7ffh]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[7ffh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7FFH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7FFH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[7ffh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquilaria_sinensis Aquilaria sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7FFH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7FFH FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ffh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ffh OCA], [https://pdbe.org/7ffh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ffh RCSB], [https://www.ebi.ac.uk/pdbsum/7ffh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ffh ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ffh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ffh OCA], [https://pdbe.org/7ffh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ffh RCSB], [https://www.ebi.ac.uk/pdbsum/7ffh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ffh ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A385MEG6_9ROSI A0A385MEG6_9ROSI]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Aquilaria sinensis]]
 [[Category: Large Structures]]
-[[Category: Lee, Y]]
+[[Category: Lee Y]]
-[[Category: Liu, Q]]
+[[Category: Liu Q]]
-[[Category: Morita, H]]
+[[Category: Morita H]]
-[[Category: Nakashima, Y]]
+[[Category: Nakashima Y]]
-[[Category: Takeshi, K]]
+[[Category: Takeshi K]]
-[[Category: Wong, C P]]
+[[Category: Wong CP]]
-[[Category: Diarylpentanoid]]
-[[Category: Transferase]]
-[[Category: Type-iii polyketide synthase]]

7ffh: Difference between revisions

Latest revision as of 17:15, 29 November 2023

Diarylpentanoid-producing polyketide synthase (N199L mutant)

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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