1od5: Difference between revisions
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1od5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OD5 FirstGlance]. <br> | <table><tr><td colspan='2'>[[1od5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OD5 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1od5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1od5 OCA], [https://pdbe.org/1od5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1od5 RCSB], [https://www.ebi.ac.uk/pdbsum/1od5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1od5 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1od5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1od5 OCA], [https://pdbe.org/1od5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1od5 RCSB], [https://www.ebi.ac.uk/pdbsum/1od5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1od5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/GLYG5_SOYBN GLYG5_SOYBN] Glycinin is the major seed storage protein of soybean (PubMed:2485233). Glycinin basic peptides (GBPs), and, to a lower extent, glycinin exhibit antibacterial activity against Gram-negative and Gram-positive bacteria (e.g. L.monocytogenes, B.subtilis, E.coli and S.enteritidis) by forming pores and aggregating in transmembranes, leading to membrane permeability and, eventually, cell death (PubMed:22236762, Ref.15, PubMed:28590128).<ref>PMID:22236762</ref> <ref>PMID:2485233</ref> <ref>PMID:28590128</ref> <ref>PMID:29037738</ref> | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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[[Category: Glycine max]] | [[Category: Glycine max]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Adachi | [[Category: Adachi M]] | ||
[[Category: Kanamori | [[Category: Kanamori J]] | ||
[[Category: Kitamura | [[Category: Kitamura K]] | ||
[[Category: Masuda | [[Category: Masuda T]] | ||
[[Category: Mikami | [[Category: Mikami B]] | ||
[[Category: Utsumi | [[Category: Utsumi S]] | ||
[[Category: Yagasaki | [[Category: Yagasaki K]] | ||
