8pfk: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 8pfk is ~~ON HOLD until Paper~~ Publication

==RNA structure with 1-methylpseudoridine, C2 space group==

== Structural highlights ==

<table><tr><td colspan='2'>[[8pfk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PFK FirstGlance]. <br>

</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.321Å</td></tr>

<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B8H:[(2~{R},3~{S},4~{R},5~{S})-5-[1-methyl-2,4-bis(oxidanylidene)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl+dihydrogen+phosphate'>B8H</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pfk OCA], [https://pdbe.org/8pfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pfk RCSB], [https://www.ebi.ac.uk/pdbsum/8pfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pfk ProSAT]</span></td></tr>

</table>

== Publication Abstract from PubMed ==

All widely used mRNA vaccines against COVID-19 contain in their sequence 1-methylpseudouridine (m1Psi) instead of uridine. In this publication, we report two high resolution crystal structures (at up to 1.01 and 1.32 A respectively) of one such double-stranded 12-mer RNA sequence crystallized in two crystal forms. The structures are compared with similar structures which do not contain this modification. Additionally, the structure of 1-methyl-pseudouridine itself was determined.

~~Authors~~:

RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines.,Nievergelt P, Berliat F, McAuley K, Dorgan CR, van Well RM, Thorn A, Spingler B ChemMedChem. 2024 Jan 18:e202300600. doi: 10.1002/cmdc.202300600. PMID:38235959<ref>PMID:38235959</ref>

~~Description~~:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>

[[Category: ~~Unreleased~~ Structures]]

</div>

== References ==

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Synthetic construct]]

[[Category: McAuley K]]

[[Category: Nievergelt P]]

[[Category: Spingler B]]

[[Category: Thorn A]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 8pfk is ON HOLD  until Paper Publication
+==RNA structure with 1-methylpseudoridine, C2 space group==
+<StructureSection load='8pfk' size='340' side='right'caption='[[8pfk]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[8pfk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PFK FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.321&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B8H:[(2~{R},3~{S},4~{R},5~{S})-5-[1-methyl-2,4-bis(oxidanylidene)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl+dihydrogen+phosphate'>B8H</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pfk OCA], [https://pdbe.org/8pfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pfk RCSB], [https://www.ebi.ac.uk/pdbsum/8pfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pfk ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+All widely used mRNA vaccines against COVID-19 contain in their sequence 1-methylpseudouridine (m1Psi) instead of uridine. In this publication, we report two high resolution crystal structures (at up to 1.01 and 1.32 A respectively) of one such double-stranded 12-mer RNA sequence crystallized in two crystal forms. The structures are compared with similar structures which do not contain this modification. Additionally, the structure of 1-methyl-pseudouridine itself was determined.
-Authors:
+RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines.,Nievergelt P, Berliat F, McAuley K, Dorgan CR, van Well RM, Thorn A, Spingler B ChemMedChem. 2024 Jan 18:e202300600. doi: 10.1002/cmdc.202300600. PMID:38235959<ref>PMID:38235959</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
+<div class="pdbe-citations 8pfk" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Synthetic construct]]
+[[Category: McAuley K]]
+[[Category: Nievergelt P]]
+[[Category: Spingler B]]
+[[Category: Thorn A]]