1bq5: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
Line 4: Line 4:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1bq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1bq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQ5 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq5 OCA], [https://pdbe.org/1bq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq5 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bq5 OCA], [https://pdbe.org/1bq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1bq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bq5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/O68601_ALCXX O68601_ALCXX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq5 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bq5 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structure of the blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 (AxgNIR) has been determined at 2.05 A resolution. AxgNIR contains both type 1 and 2 Cu sites, the geometry of the former being distorted tetrahedral. The superpositioning of the type 1 Cu sites in the blue enzyme and a green nitrite reductase revealed that the orientation of the Met150 side chain differed. The deviation of the Sdelta(Met150) atom from the axial position of the NNS plane formed by two Ndelta(His95 and His145) and one Sgamma(Cys136) atom caused the difference in the colors of the enzymes, i.e. blue and green.
Type 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases.,Inoue T, Gotowda M, Deligeer, Kataoka K, Yamaguchi K, Suzuki S, Watanabe H, Gohow M, Kai Y J Biochem. 1998 Nov;124(5):876-9. PMID:9792907<ref>PMID:9792907</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1bq5" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
Line 36: Line 28:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Deligeer]]
[[Category: Deligeer]]
[[Category: Goho, M]]
[[Category: Goho M]]
[[Category: Gotowda, M]]
[[Category: Gotowda M]]
[[Category: Inoue, T]]
[[Category: Inoue T]]
[[Category: Kataoka, K]]
[[Category: Kataoka K]]
[[Category: Suzuki, S]]
[[Category: Suzuki S]]
[[Category: Watanabe, H]]
[[Category: Watanabe H]]
[[Category: Yamaguchi, K]]
[[Category: Yamaguchi K]]
[[Category: Yasushi, K A.I]]
[[Category: Yasushi KAI]]
[[Category: Cuproprotein]]
[[Category: Nitrite reductase]]
[[Category: Oxidoreductase]]

Revision as of 06:38, 7 February 2024

NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051

1bq5, resolution 2.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=1bq5&oldid=4040757"