1ln4: Difference between revisions

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<StructureSection load='1ln4' size='340' side='right'caption='[[1ln4]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='1ln4' size='340' side='right'caption='[[1ln4]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1ln4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LN4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LN4 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ln4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LN4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LN4 FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YHBY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ln4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ln4 OCA], [https://pdbe.org/1ln4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ln4 RCSB], [https://www.ebi.ac.uk/pdbsum/1ln4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ln4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ln4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ln4 OCA], [https://pdbe.org/1ln4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ln4 RCSB], [https://www.ebi.ac.uk/pdbsum/1ln4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ln4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/YHBY_ECOLI YHBY_ECOLI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ln4 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ln4 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
E. coli YhbY belongs to a conserved family of hypothetical proteins represented in eubacteria, archaea, and plants (Pfam code UPF0044). Three maize proteins harboring UPF0044-like domains are required for chloroplast group II intron splicing, and bioinformatic data suggest a role for prokaryotic UPF0044 members in translation. The crystal structure of YhbY has been determined. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Modeling studies indicate that the same surface is highly basic in all members of UPF0044, suggesting a conserved RNA binding surface. Taken together, the evidence suggests that members of UPF0044 constitute a previously unrecognized class of RNA binding domain.
Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins.,Ostheimer GJ, Barkan A, Matthews BW Structure. 2002 Nov;10(11):1593-601. PMID:12429100<ref>PMID:12429100</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1ln4" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus coli migula 1895]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Barkan, A]]
[[Category: Barkan A]]
[[Category: Matthews, B W]]
[[Category: Matthews BW]]
[[Category: Ostheimer, G J]]
[[Category: Ostheimer GJ]]
[[Category: Putative rna-binding protein]]
[[Category: Putative translation factor]]
[[Category: Rna binding protein]]

Latest revision as of 07:34, 14 February 2024

CRYSTAL STRUCTURE OF E. COLI YHBY

1ln4, resolution 1.50Å

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