1pry: Difference between revisions

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<StructureSection load='1pry' size='340' side='right'caption='[[1pry]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
<StructureSection load='1pry' size='340' side='right'caption='[[1pry]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1pry]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PRY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1PRY FirstGlance]. <br>
<table><tr><td colspan='2'>[[1pry]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PRY FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FLPA OR PF0059 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1pry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pry OCA], [http://pdbe.org/1pry PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pry RCSB], [http://www.ebi.ac.uk/pdbsum/1pry PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pry ProSAT], [http://www.topsan.org/Proteins/SECSG/1pry TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pry OCA], [https://pdbe.org/1pry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pry RCSB], [https://www.ebi.ac.uk/pdbsum/1pry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pry ProSAT], [https://www.topsan.org/Proteins/SECSG/1pry TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/FLPA_PYRFU FLPA_PYRFU]] Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (By similarity).[HAMAP-Rule:MF_00351]  
[https://www.uniprot.org/uniprot/FLPA_PYRFU FLPA_PYRFU] Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (By similarity).[HAMAP-Rule:MF_00351]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pry ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pry ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The methyltransferase fibrillarin is the catalytic component of ribonucleoprotein complexes that direct site-specific methylation of precursor ribosomal RNA and are critical for ribosome biogenesis in eukaryotes and archaea. Here we report the crystal structure of a fibrillarin ortholog from the hyperthermophilic archaeon Pyrococcus furiosus at 1.97A resolution. Comparisons of the X-ray structures of fibrillarin orthologs from Methanococcus jannashii and Archaeoglobus fulgidus reveal nearly identical backbone configurations for the catalytic C-terminal domain with the exception of a unique loop conformation at the S-adenosyl-l-methionine (AdoMet) binding pocket in P. furiosus. In contrast, the N-terminal domains are divergent which may explain why some forms of fibrillarin apparently homodimerize (M. jannashii) while others are monomeric (P. furiosus and A. fulgidus). Three positively charged amino acids surround the AdoMet-binding site and sequence analysis indicates that this is a conserved feature of both eukaryotic and archaeal fibrillarins. We discuss the possibility that these basic residues of fibrillarin are important for RNA-guided rRNA methylation.
Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus.,Deng L, Starostina NG, Liu ZJ, Rose JP, Terns RM, Terns MP, Wang BC Biochem Biophys Res Commun. 2004 Mar 12;315(3):726-32. PMID:14975761<ref>PMID:14975761</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1pry" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 43587]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Deng, L]]
[[Category: Liu, Z J]]
[[Category: Rose, J P]]
[[Category: Structural genomic]]
[[Category: Starostina, N G]]
[[Category: Terns, M P]]
[[Category: Terns, R M]]
[[Category: Wang, B C]]
[[Category: Fibrillarin]]
[[Category: Methylation]]
[[Category: Pfu-65527]]
[[Category: PSI, Protein structure initiative]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
[[Category: Ribosomal rna processing]]
[[Category: Deng L]]
[[Category: Secsg]]
[[Category: Liu Z-J]]
[[Category: Snornp]]
[[Category: Rose JP]]
[[Category: Transferase]]
[[Category: Starostina NG]]
[[Category: Terns MP]]
[[Category: Terns RM]]
[[Category: Wang B-C]]

Latest revision as of 08:10, 14 February 2024

Structure Determination of Fibrillarin Homologue From Hyperthermophilic Archaeon Pyrococcus furiosus (Pfu-65527)

1pry, resolution 1.97Å

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