6brt: Difference between revisions

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<StructureSection load='6brt' size='340' side='right'caption='[[6brt]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
<StructureSection load='6brt' size='340' side='right'caption='[[6brt]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6brt]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_glumaepatula Oryza glumaepatula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BRT OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6BRT FirstGlance]. <br>
<table><tr><td colspan='2'>[[6brt]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_glumipatula Oryza glumipatula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BRT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BRT FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H3M:(5R)-5-HYDROXY-3-METHYLFURAN-2(5H)-ONE'>H3M</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.393&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6brt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6brt OCA], [http://pdbe.org/6brt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6brt RCSB], [http://www.ebi.ac.uk/pdbsum/6brt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6brt ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=H3M:(5R)-5-HYDROXY-3-METHYLFURAN-2(5H)-ONE'>H3M</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6brt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6brt OCA], [https://pdbe.org/6brt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6brt RCSB], [https://www.ebi.ac.uk/pdbsum/6brt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6brt ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/A0A0D9Z3K8_9ORYZ A0A0D9Z3K8_9ORYZ]
The strigolactones, a class of plant hormones, regulate many aspects of plant physiology. In the inhibition of shoot branching, the alpha/beta hydrolase D14-which metabolizes strigolactone-interacts with the F-box protein D3 to ubiquitinate and degrade the transcription repressor D53. Despite the fact that multiple modes of interaction between D14 and strigolactone have recently been determined, how the hydrolase functions with D3 to mediate hormone-dependent D53 ubiquitination remains unknown. Here we show that D3 has a C-terminal alpha-helix that can switch between two conformational states. The engaged form of this alpha-helix facilitates the binding of D3 and D14 with a hydrolysed strigolactone intermediate, whereas the dislodged form can recognize unmodified D14 in an open conformation and inhibits its enzymatic activity. The D3 C-terminal alpha-helix enables D14 to recruit D53 in a strigolactone-dependent manner, which in turn activates the hydrolase. By revealing the structural plasticity of the SCF(D3-D14) ubiquitin ligase, our results suggest a mechanism by which the E3 coordinates strigolactone signalling and metabolism.
 
Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.,Shabek N, Ticchiarelli F, Mao H, Hinds TR, Leyser O, Zheng N Nature. 2018 Nov;563(7733):652-656. doi: 10.1038/s41586-018-0743-5. Epub 2018 Nov, 21. PMID:30464344<ref>PMID:30464344</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6brt" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oryza glumaepatula]]
[[Category: Oryza glumipatula]]
[[Category: Hinds, T R]]
[[Category: Hinds TR]]
[[Category: Leyser, O]]
[[Category: Leyser O]]
[[Category: Mao, H]]
[[Category: Mao H]]
[[Category: Shabek, N]]
[[Category: Shabek N]]
[[Category: Ticchiarelli, F]]
[[Category: Ticchiarelli F]]
[[Category: Zheng, N]]
[[Category: Zheng N]]
[[Category: F-box]]
[[Category: Ligase]]
[[Category: Ubiquitin ligase]]
Retrieved from "https://proteopedia.org/6brt"