6dv3: Difference between revisions

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<SX load='6dv3' size='340' side='right' viewer='molstar' caption='[[6dv3]], [[Resolution|resolution]] 4.10&Aring;' scene=''>
<SX load='6dv3' size='340' side='right' viewer='molstar' caption='[[6dv3]], [[Resolution|resolution]] 4.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6dv3]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DV3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6DV3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6dv3]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DV3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DV3 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6dv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dv3 OCA], [http://pdbe.org/6dv3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dv3 RCSB], [http://www.ebi.ac.uk/pdbsum/6dv3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dv3 ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dv3 OCA], [https://pdbe.org/6dv3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dv3 RCSB], [https://www.ebi.ac.uk/pdbsum/6dv3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dv3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/INVG_SALTY INVG_SALTY]] Involved in the invasion of the cells of the intestinal epithelium. Could be necessary for the export of invasion related determinants.
[https://www.uniprot.org/uniprot/SCTC1_SALTY SCTC1_SALTY] Component of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells (PubMed:9786184, PubMed:27974800, PubMed:30242280). Forms a ring-shaped multimeric structure with an apparent central pore in the outer membrane (PubMed:9786184, PubMed:21385715, PubMed:27974800, PubMed:30242280).<ref>PMID:21385715</ref> <ref>PMID:27974800</ref> <ref>PMID:30242280</ref> <ref>PMID:9786184</ref>  
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The bacterial type III secretion system, or injectisome, is a syringe shaped nanomachine essential for the virulence of many disease causing Gram-negative bacteria. At the core of the injectisome structure is the needle complex, a continuous channel formed by the highly oligomerized inner and outer membrane hollow rings and a polymerized helical needle filament which spans through and projects into the infected host cell. Here we present the near-atomic resolution structure of a needle complex from the prototypical Salmonella Typhimurium SPI-1 type III secretion system, with local masking protocols allowing for model building and refinement of the major membrane spanning components of the needle complex base in addition to an isolated needle filament. This work provides significant insight into injectisome structure and assembly and importantly captures the molecular basis for substrate induced gating in the giant outer membrane secretin portal family.
 
Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin.,Hu J, Worrall LJ, Hong C, Vuckovic M, Atkinson CE, Caveney N, Yu Z, Strynadka NCJ Nat Commun. 2018 Sep 21;9(1):3840. doi: 10.1038/s41467-018-06298-8. PMID:30242280<ref>PMID:30242280</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6dv3" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
[[Category: Atkinson, C E]]
[[Category: Atkinson CE]]
[[Category: Hu, J]]
[[Category: Hu J]]
[[Category: Strynadka, N C.J]]
[[Category: Strynadka NCJ]]
[[Category: Vuckovic, M]]
[[Category: Vuckovic M]]
[[Category: Worrall, L J]]
[[Category: Worrall LJ]]
[[Category: Membrane protein]]
[[Category: Secretin]]
[[Category: Type iii secretion system]]
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