6nmz: Difference between revisions

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<StructureSection load='6nmz' size='340' side='right'caption='[[6nmz]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='6nmz' size='340' side='right'caption='[[6nmz]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6nmz]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NMZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NMZ FirstGlance]. <br>
<table><tr><td colspan='2'>[[6nmz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NMZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NMZ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=KSJ:[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic+acid'>KSJ</scene>, <scene name='pdbligand=KSP:[(1R,2S)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic+acid'>KSP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6cve|6cve]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KSJ:[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic+acid'>KSJ</scene>, <scene name='pdbligand=KSP:[(1R,2S)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic+acid'>KSP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dethiobiotin_synthase Dethiobiotin synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.3 6.3.3.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nmz OCA], [https://pdbe.org/6nmz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nmz RCSB], [https://www.ebi.ac.uk/pdbsum/6nmz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nmz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nmz OCA], [http://pdbe.org/6nmz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nmz RCSB], [http://www.ebi.ac.uk/pdbsum/6nmz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nmz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/BIOD_MYCTU BIOD_MYCTU]] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.<ref>PMID:20565114</ref>
[https://www.uniprot.org/uniprot/BIOD_MYCTU BIOD_MYCTU] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.<ref>PMID:20565114</ref>  
 
==See Also==
*[[Dethiobiotin synthetase 3D structures|Dethiobiotin synthetase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Dethiobiotin synthase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Bruning, J B]]
[[Category: Mycobacterium tuberculosis H37Rv]]
[[Category: Polyak, S W]]
[[Category: Bruning JB]]
[[Category: Thompson, A P]]
[[Category: Polyak SW]]
[[Category: Wegener, K L]]
[[Category: Thompson AP]]
[[Category: Enzyme]]
[[Category: Wegener KL]]
[[Category: Nucleotide triphosphate binding]]
[[Category: Synthetase]]
[[Category: Transferase]]

Latest revision as of 14:48, 13 March 2024

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with an intentionally produced fragment degradation product B9D

6nmz, resolution 2.40Å

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