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==SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS==
==SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS==
<StructureSection load='1emw' size='340' side='right'caption='[[1emw]], [[NMR_Ensembles_of_Models | 47 NMR models]]' scene=''>
<StructureSection load='1emw' size='340' side='right'caption='[[1emw]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1emw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMW FirstGlance]. <br>
<table><tr><td colspan='2'>[[1emw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMW FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1qd7|1qd7]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emw OCA], [https://pdbe.org/1emw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emw RCSB], [https://www.ebi.ac.uk/pdbsum/1emw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emw OCA], [https://pdbe.org/1emw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emw RCSB], [https://www.ebi.ac.uk/pdbsum/1emw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/RS16_THETH RS16_THETH]] Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.  
[https://www.uniprot.org/uniprot/RS16_THETH RS16_THETH] Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 19:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1emw ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1emw ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
BACKGROUND: X-ray crystallography has recently yielded much-improved electron-density maps of the bacterial ribosome and its two subunits and many structural details of bacterial ribosome subunits are now being resolved. One approach to complement the structures and elucidate the details of rRNA and protein packing is to determine structures of individual protein components and model these into existing intermediate resolution electron density. RESULTS: We have determined the solution structure of the ribosomal protein S16 from Thermus thermophilus. S16 is a mixed alpha/beta protein with a novel folding scaffold based on a five-stranded antiparallel/parallel beta sheet. Three large loops, which are partially disordered, extend from the sheet and two alpha helices are packed against its concave surface. Calculations of surface electrostatic potentials show a large continuous area of positive electrostatic potential and smaller areas of negative potential. S16 was modeled into a 5.5 A electron-density map of the T. thermophilus 30S ribosomal subunit. CONCLUSIONS: The location and orientation of S16 in a narrow crevice formed by helix 21 and several other unassigned rRNA helices is consistent with electron density corresponding to the shape of S16, hydroxyl radical protection data, and the electrostatic surface potential of S16. Two protein neighbors to S16 are S4 and S20, which facilitate binding of S16 to the 30S subunit. Overall, this work exemplifies the benefits of combining high-resolution nuclear magnetic resonance (NMR) structures of individual components with low-resolution X-ray maps to elucidate structures of large complexes.
Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.,Allard P, Rak AV, Wimberly BT, Clemons WM Jr, Kalinin A, Helgstrand M, Garber MB, Ramakrishnan V, Hard T Structure. 2000 Aug 15;8(8):875-82. PMID:10997906<ref>PMID:10997906</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1emw" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Ribosomal protein S16|Ribosomal protein S16]]
*[[Ribosomal protein S16|Ribosomal protein S16]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Allard, P]]
[[Category: Thermus thermophilus]]
[[Category: Clemons, W M]]
[[Category: Allard P]]
[[Category: Garber, M B]]
[[Category: Clemons Jr WM]]
[[Category: Hard, T]]
[[Category: Garber MB]]
[[Category: Helgstrand, M]]
[[Category: Hard T]]
[[Category: Kalinin, A]]
[[Category: Helgstrand M]]
[[Category: Rak, A V]]
[[Category: Kalinin A]]
[[Category: Ramakrishnan, V]]
[[Category: Rak AV]]
[[Category: Wimberly, B T]]
[[Category: Ramakrishnan V]]
[[Category: Mixed alpha/beta protein]]
[[Category: Wimberly BT]]
[[Category: Ribosome]]

Revision as of 10:04, 20 March 2024

SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS

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