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==NMR STRUCTURE OF GLUTAMATE MUTASE (B12-BINDING SUBUNIT) COMPLEXED WITH THE VITAMIN B12 NUCLEOTIDE==
==NMR STRUCTURE OF GLUTAMATE MUTASE (B12-BINDING SUBUNIT) COMPLEXED WITH THE VITAMIN B12 NUCLEOTIDE==
<StructureSection load='1id8' size='340' side='right'caption='[[1id8]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
<StructureSection load='1id8' size='340' side='right'caption='[[1id8]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1id8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"clostridium_tetanomorphum"_bulloch_et_al._1919 "clostridium tetanomorphum" bulloch et al. 1919]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ID8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ID8 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1id8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_tetanomorphum Clostridium tetanomorphum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ID8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ID8 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DBI:PHOSPHORIC+ACID+MONO-[5-(5,6-DIMETHYL-BENZOIMIDAZOL-1-YL)-4-HYDROXY-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>DBI</scene>, <scene name='pdbligand=FOP:2-HYDROXY-PROPYL-AMMONIUM'>FOP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fmf|1fmf]], [[1cb7|1cb7]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DBI:PHOSPHORIC+ACID+MONO-[5-(5,6-DIMETHYL-BENZOIMIDAZOL-1-YL)-4-HYDROXY-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>DBI</scene>, <scene name='pdbligand=FOP:2-HYDROXY-PROPYL-AMMONIUM'>FOP</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Methylaspartate_mutase Methylaspartate mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.1 5.4.99.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1id8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1id8 OCA], [https://pdbe.org/1id8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1id8 RCSB], [https://www.ebi.ac.uk/pdbsum/1id8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1id8 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1id8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1id8 OCA], [https://pdbe.org/1id8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1id8 RCSB], [https://www.ebi.ac.uk/pdbsum/1id8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1id8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/GMSS_CLOTT GMSS_CLOTT]] Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).[HAMAP-Rule:MF_00526]<ref>PMID:8051138</ref>
[https://www.uniprot.org/uniprot/GMSS_CLOTT GMSS_CLOTT] Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).[HAMAP-Rule:MF_00526]<ref>PMID:8051138</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1id8 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1id8 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Glutamate mutase from Clostridium tetanomorphum binds coenzyme B(12) in a base-off/His-on form, in which the nitrogenous ligand of the B(12)-nucleotide function is displaced from cobalt by a conserved histidine. The effect of binding the B(12)-nucleotide moiety to MutS, the B(12)-binding subunit of glutamate mutase, was investigated using NMR spectroscopic methods. Binding of the B(12)-nucleotide to MutS was determined to occur with K(d)=5.6(+/-0.7) mM and to be accompanied by a specific conformational change in the protein. The nucleotide binding cleft of the apo-protein, which is formed by a dynamic segment with propensity for partial alpha-helical conformation (the "nascent" alpha-helix), becomes completely structured upon binding of the B(12)-nucleotide, with formation of helix alpha1. In contrast, the segment containing the conserved residues of the B(12)-binding Asp-x-His-x-x-Gly motif remains highly dynamic in the protein/B(12)-nucleotide complex. From relaxation studies, the time constant tau, which characterizes the time scale for the formation of helix alpha1, was estimated to be about 30 micros (15)N and was the same in both, apo-protein and nucleotide-bound protein. Thus, the binding of the B(12)-nucleotide moiety does not significantly alter the kinetics of helix formation, but only shifts the equilibrium towards the structured fold. These results indicate MutS to be structured in such a way, as to be able to trap the nucleotide segment of the base-off form of coenzyme B(12) and provide, accordingly, the first structural clues as to how the process of B(12)-binding occurs.
The B(12)-binding subunit of glutamate mutase from Clostridium tetanomorphum traps the nucleotide moiety of coenzyme B(12).,Tollinger M, Eichmuller C, Konrat R, Huhta MS, Marsh EN, Krautler B J Mol Biol. 2001 Jun 8;309(3):777-91. PMID:11397096<ref>PMID:11397096</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1id8" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Clostridium tetanomorphum bulloch et al. 1919]]
[[Category: Clostridium tetanomorphum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Methylaspartate mutase]]
[[Category: Eichmuller C]]
[[Category: Eichmuller, C]]
[[Category: Huhta MS]]
[[Category: Huhta, M S]]
[[Category: Konrat R]]
[[Category: Konrat, R]]
[[Category: Krautler B]]
[[Category: Krautler, B]]
[[Category: Marsh ENG]]
[[Category: Marsh, E N.G]]
[[Category: Tollinger M]]
[[Category: Tollinger, M]]
[[Category: Coenzyme b12]]
[[Category: Isomerase]]
[[Category: Ligand binding]]
[[Category: Nucleotide]]
[[Category: Protein folding]]
[[Category: Protein nmr spectroscopy]]

Revision as of 07:46, 3 April 2024

NMR STRUCTURE OF GLUTAMATE MUTASE (B12-BINDING SUBUNIT) COMPLEXED WITH THE VITAMIN B12 NUCLEOTIDE

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