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<StructureSection load='1lnl' size='340' side='right'caption='[[1lnl]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
<StructureSection load='1lnl' size='340' side='right'caption='[[1lnl]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1lnl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rapana_thomasiana Rapana thomasiana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LNL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LNL FirstGlance]. <br>
<table><tr><td colspan='2'>[[1lnl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rapana_venosa Rapana venosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LNL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LNL FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lnl OCA], [https://pdbe.org/1lnl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lnl RCSB], [https://www.ebi.ac.uk/pdbsum/1lnl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lnl ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lnl OCA], [https://pdbe.org/1lnl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lnl RCSB], [https://www.ebi.ac.uk/pdbsum/1lnl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lnl ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/HCY2E_RAPVE HCY2E_RAPVE]] Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.[UniProtKB:P12659]  
[https://www.uniprot.org/uniprot/HCY2E_RAPVE HCY2E_RAPVE] Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.[UniProtKB:P12659]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lnl ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lnl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Structure-function relationships in a molluscan hemocyanin have been investigated by determining the crystal structure of the Rapana thomasiana (gastropod) hemocyanin functional unit RtH2e in deoxygenated form at 3.38 A resolution. This is the first X-ray structure of an unit from the wall of the molluscan hemocyanin cylinder. The crystal structure of RtH2e demonstrates molecular self-assembly of six identical molecules forming a regular hexameric cylinder. This suggests how the functional units are ordered in the wall of the native molluscan hemocyanins. The molecular arrangement is stabilized by specific protomer-to-protomer interactions, which are probably typical for the functional units building the wall of the cylinders. A molecular mechanism for cooperative dioxygen binding in molluscan hemocyanins is proposed on the basis of the molecular interactions between the protomers. In particular, the deoxygenated RtH2e structure reveals a tunnel leading from two opposite sides of the molecule to the active site. The tunnel represents a possible entrance pathway for dioxygen molecules. No such tunnels have been observed in the crystal structure of the oxy-Odg, a functional unit from the Octopus dofleini (cephalopod) hemocyanin in oxygenated form.
The structure of a functional unit from the wall of a gastropod hemocyanin offers a possible mechanism for cooperativity.,Perbandt M, Guthohrlein EW, Rypniewski W, Idakieva K, Stoeva S, Voelter W, Genov N, Betzel C Biochemistry. 2003 Jun 3;42(21):6341-6. PMID:12767214<ref>PMID:12767214</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1lnl" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Rapana thomasiana]]
[[Category: Rapana venosa]]
[[Category: Betzel, C]]
[[Category: Betzel C]]
[[Category: Genov, N]]
[[Category: Genov N]]
[[Category: Guthoehrlein, E W]]
[[Category: Guthoehrlein EW]]
[[Category: Idakieva, K]]
[[Category: Idakieva K]]
[[Category: Perbandt, M]]
[[Category: Perbandt M]]
[[Category: Rypniewski, W]]
[[Category: Rypniewski W]]
[[Category: Stoeva, S]]
[[Category: Stoeva S]]
[[Category: Voelter, W]]
[[Category: Voelter W]]
[[Category: Cooperativity]]
[[Category: Deoxygenated form]]
[[Category: Hemocyanin]]
[[Category: Metal binding site]]
[[Category: Oxygen]]
[[Category: Oxygen storage-transport complex]]

Revision as of 08:25, 10 April 2024

Structure of deoxygenated hemocyanin from Rapana thomasiana

1lnl, resolution 3.30Å

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