1ny1: Difference between revisions

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<StructureSection load='1ny1' size='340' side='right'caption='[[1ny1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='1ny1' size='340' side='right'caption='[[1ny1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1ny1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1NY1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ny1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NY1 FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PdaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ny1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ny1 OCA], [http://pdbe.org/1ny1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ny1 RCSB], [http://www.ebi.ac.uk/pdbsum/1ny1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ny1 ProSAT], [http://www.topsan.org/Proteins/NESGC/1ny1 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ny1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ny1 OCA], [https://pdbe.org/1ny1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ny1 RCSB], [https://www.ebi.ac.uk/pdbsum/1ny1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ny1 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ny1 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/PDAA_BACSU PDAA_BACSU]] Catalyzes the deacetylation of N-acetylmuramic acid (MurNAc) residues in glycan strands of peptidoglycan, leading to the formation of muramic delta-lactam residues in spore cortex, after transpeptidation of deacetylated muramic acid residues. PdaA probably carries out both deacetylation and lactam ring formation and requires the product of CwlD activity on peptidoglycan as a substrate. Is required for germination. Cannot use chitin oligomer (hexa-N-acetylchitohexaose) as a substrate.<ref>PMID:12374835</ref> <ref>PMID:14679227</ref> <ref>PMID:15687192</ref>
[https://www.uniprot.org/uniprot/PDAA_BACSU PDAA_BACSU] Catalyzes the deacetylation of N-acetylmuramic acid (MurNAc) residues in glycan strands of peptidoglycan, leading to the formation of muramic delta-lactam residues in spore cortex, after transpeptidation of deacetylated muramic acid residues. PdaA probably carries out both deacetylation and lactam ring formation and requires the product of CwlD activity on peptidoglycan as a substrate. Is required for germination. Cannot use chitin oligomer (hexa-N-acetylchitohexaose) as a substrate.<ref>PMID:12374835</ref> <ref>PMID:14679227</ref> <ref>PMID:15687192</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Acton, T B]]
[[Category: Acton TB]]
[[Category: Chiang, Y]]
[[Category: Chiang Y]]
[[Category: Edstrom, W]]
[[Category: Edstrom W]]
[[Category: Forouhar, F]]
[[Category: Forouhar F]]
[[Category: Hunt, J F]]
[[Category: Hunt JF]]
[[Category: Khan, J]]
[[Category: Khan J]]
[[Category: Ma, L]]
[[Category: Ma L]]
[[Category: Montelione, G T]]
[[Category: Montelione GT]]
[[Category: Structural genomic]]
[[Category: Tong L]]
[[Category: Tong, L]]
[[Category: Nesg]]
[[Category: Polysaccharide deac]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
Retrieved from "https://proteopedia.org/1ny1"