Sandbox 323: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Jennah Hoke (talk | contribs) No edit summary |
Jennah Hoke (talk | contribs) No edit summary |
||
| Line 21: | Line 21: | ||
The beginning experiments were conducted on molecular docking sites to compare the structure of the 3DS8 active site with known proteins. Using the SPRITE database [2], the 3DS8 protein was matched with a few proteases through right-handed superpositions with RMSD values ranging from 1.20-1.40, indicating relative similarities. | The beginning experiments were conducted on molecular docking sites to compare the structure of the 3DS8 active site with known proteins. Using the SPRITE database [2], the 3DS8 protein was matched with a few proteases through right-handed superpositions with RMSD values ranging from 1.20-1.40, indicating relative similarities. | ||
The left-handed superpositions matched with more trypsins and displayed better RMSD values ranging from 0.93-1.11. | The left-handed superpositions matched with more trypsins and displayed better RMSD values ranging from 0.93-1.11. | ||
The 3DS8 protein did not have many very specific active site matches with known proteins on the Chimera software [3], however, it was very similar to trypsin, | The 3DS8 protein did not have many very specific active site matches with known proteins on the Chimera software [3], however, it was very similar to trypsin, | ||
