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==THREE-DIMENSIONAL SOLUTION STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN-BINDING DOMAIN OF PROTEIN L. COMPARISON WITH THE IGG-BINDING DOMAINS OF PROTEIN G==
==THREE-DIMENSIONAL SOLUTION STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN-BINDING DOMAIN OF PROTEIN L. COMPARISON WITH THE IGG-BINDING DOMAINS OF PROTEIN G==
<StructureSection load='2ptl' size='340' side='right'caption='[[2ptl]], [[NMR_Ensembles_of_Models | 21 NMR models]]' scene=''>
<StructureSection load='2ptl' size='340' side='right'caption='[[2ptl]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2ptl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Finm2 Finm2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PTL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PTL FirstGlance]. <br>
<table><tr><td colspan='2'>[[2ptl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna_ATCC_29328 Finegoldia magna ATCC 29328]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PTL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PTL FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ptl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ptl OCA], [https://pdbe.org/2ptl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ptl RCSB], [https://www.ebi.ac.uk/pdbsum/2ptl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ptl ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ptl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ptl OCA], [https://pdbe.org/2ptl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ptl RCSB], [https://www.ebi.ac.uk/pdbsum/2ptl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ptl ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q53291_FINMA Q53291_FINMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ptl ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ptl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Protein L is a multidomain protein expressed at the surface of some strains of the anaerobic bacterial species Peptostreptococcus magnus. It has affinity for immunoglobulin (Ig) through interaction with framework structures in the variable Ig light chain domain. The Ig-binding activity is located to five homologous repeats called B1-B5 in the N-terminal part of the protein. We have determined the three-dimensional solution structure of the 76 amino acid residue long B1 domain using NMR spectroscopy and distance geometry-restrained simulated annealing. The domain is composed of a 15 amino acid residue long disordered N-terminus followed by a folded portion comprising an alpha-helix packed against a four-stranded beta-sheet. These secondary structural elements are well determined with a backbone atomic root mean square deviation from their mean of 0.54 A. The B domains of protein L show very limited sequence homology to the domains of streptococcal protein G interacting with the heavy chains of IgG. However, despite this fact, and their different binding properties, the fold of the B1 domain was found to be similar to the fold of the IgG-binding protein G domains [Wikstrom, M., Sjobring, U., Kastern, W., Bjorck, L., Drakenberg, T., &amp; Forsen, S. (1993) Biochemistry 32, 3381-3386]. In the present study, the solution structure of the B1 domain enabled a more detailed comparison which can explain the different Ig-binding specificities of these two bacterial surface proteins. Among the differences observed, the alpha-helix orientation is the most striking.(ABSTRACT TRUNCATED AT 250 WORDS)
Three-dimensional solution structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G.,Wikstrom M, Drakenberg T, Forsen S, Sjobring U, Bjorck L Biochemistry. 1994 Nov 29;33(47):14011-7. PMID:7947810<ref>PMID:7947810</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2ptl" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Finm2]]
[[Category: Finegoldia magna ATCC 29328]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Bjoerck, L]]
[[Category: Bjoerck L]]
[[Category: Drakenberg, T]]
[[Category: Drakenberg T]]
[[Category: Forsen, S]]
[[Category: Forsen S]]
[[Category: Sjoebring, U]]
[[Category: Sjoebring U]]
[[Category: Wikstroem, M]]
[[Category: Wikstroem M]]

Latest revision as of 07:05, 1 May 2024

THREE-DIMENSIONAL SOLUTION STRUCTURE OF AN IMMUNOGLOBULIN LIGHT CHAIN-BINDING DOMAIN OF PROTEIN L. COMPARISON WITH THE IGG-BINDING DOMAINS OF PROTEIN G

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