1s58: Difference between revisions

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[[Image:1s58.jpg|left|200px]]
[[Image:1s58.jpg|left|200px]]


{{Structure
<!--
|PDB= 1s58 |SIZE=350|CAPTION= <scene name='initialview01'>1s58</scene>, resolution 3.5&Aring;
The line below this paragraph, containing "STRUCTURE_1s58", creates the "Structure Box" on the page.
|SITE=
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|LIGAND=
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
|GENE= vp2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10798 Human parvovirus B19])
-->
|DOMAIN=
{{STRUCTURE_1s58|  PDB=1s58 |  SCENE= }}  
|RELATEDENTRY=[[1k3v|1K3V]], [[1lp3|1LP3]], [[1fpv|1FPV]], [[1mvm|1mvm]], [[4dpv|4dpv]], [[1dnv|1dnv]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s58 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s58 OCA], [http://www.ebi.ac.uk/pdbsum/1s58 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1s58 RCSB]</span>
}}


'''The structure of B19 parvovirus capsid'''
'''The structure of B19 parvovirus capsid'''
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==About this Structure==
==About this Structure==
1S58 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Human_parvovirus_b19 Human parvovirus b19]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S58 OCA].  
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S58 OCA].  


==Reference==
==Reference==
The structure of human parvovirus B19., Kaufmann B, Simpson AA, Rossmann MG, Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11628-33. Epub 2004 Aug 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15289612 15289612]
The structure of human parvovirus B19., Kaufmann B, Simpson AA, Rossmann MG, Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11628-33. Epub 2004 Aug 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15289612 15289612]
[[Category: Human parvovirus b19]]
[[Category: Protein complex]]
[[Category: Kaufmann, B.]]
[[Category: Kaufmann, B.]]
[[Category: Rossmann, M G.]]
[[Category: Rossmann, M G.]]
[[Category: Simpson, A A.]]
[[Category: Simpson, A A.]]
[[Category: beta-barrel]]
[[Category: Beta-barrel]]
[[Category: icosahedral capsid]]
[[Category: Icosahedral capsid]]
[[Category: icosahedral virus]]
[[Category: Icosahedral virus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 08:18:52 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:37:31 2008''

Revision as of 05:18, 3 May 2008

File:1s58.jpg

Template:STRUCTURE 1s58

The structure of B19 parvovirus capsid


Overview

Human parvovirus B19 is the only parvovirus known to be a human pathogen. The structure of recombinant B19-like particles has been determined to approximately 3.5-A resolution by x-ray crystallography and, to our knowledge, represents the first near-atomic structure of an Erythrovirus. The polypeptide fold of the major capsid protein VP2 is a "jelly roll" with a beta-barrel motif similar to that found in many icosahedral viruses. The large loops connecting the strands of the beta-barrel form surface features that differentiate B19 from other parvoviruses. Although B19 VP2 has only 26% sequence identity to VP3 of adeno-associated virus, 72% of the C(alpha) atoms can be aligned structurally with a rms deviation of 1.8 A. Both viruses require an integrin as a coreceptor, and conserved surface features suggest a common receptor-binding region.

About this Structure

Full crystallographic information is available from OCA.

Reference

The structure of human parvovirus B19., Kaufmann B, Simpson AA, Rossmann MG, Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11628-33. Epub 2004 Aug 2. PMID:15289612 Page seeded by OCA on Sat May 3 08:18:52 2008

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