6s8n: Difference between revisions

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<SX load='6s8n' size='340' side='right' viewer='molstar' caption='[[6s8n]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
<SX load='6s8n' size='340' side='right' viewer='molstar' caption='[[6s8n]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6s8n]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/"shigella_paradysenteriae"_weldin_1927 "shigella paradysenteriae" weldin 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S8N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6S8N FirstGlance]. <br>
<table><tr><td colspan='2'>[[6s8n]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S8N FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCQ:2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE'>DCQ</scene>, <scene name='pdbligand=L0W:lipopolysaccharide+fragment'>L0W</scene>, <scene name='pdbligand=LMN:LAURYL+MALTOSE+NEOPENTYL+GLYCOL'>LMN</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SGF_01136 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927]), lptC, SFxv_3552 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927]), lptF, SF4228, S4489 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927]), yjgQ, S4488, CQA91_25110, NCTC9783_00309, SAMEA3710568_03584 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCQ:2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE'>DCQ</scene>, <scene name='pdbligand=L0W:lipopolysaccharide+fragment'>L0W</scene>, <scene name='pdbligand=LMN:LAURYL+MALTOSE+NEOPENTYL+GLYCOL'>LMN</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6s8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s8n OCA], [http://pdbe.org/6s8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s8n RCSB], [http://www.ebi.ac.uk/pdbsum/6s8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s8n ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s8n OCA], [https://pdbe.org/6s8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s8n RCSB], [https://www.ebi.ac.uk/pdbsum/6s8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s8n ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/LPTF_SHIFL LPTF_SHIFL]] Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. [[http://www.uniprot.org/uniprot/D2A8C1_SHIF2 D2A8C1_SHIF2]] Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.[HAMAP-Rule:MF_01915]  Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane.[PIRNR:PIRNR028513]
[https://www.uniprot.org/uniprot/LPTB_SHIFL LPTB_SHIFL] Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity).
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== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</SX>
</SX>
[[Category: Shigella paradysenteriae weldin 1927]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Chang, S H]]
[[Category: Shigella flexneri]]
[[Category: Dong, C J]]
[[Category: Chang SH]]
[[Category: Dong, H H]]
[[Category: Dong CJ]]
[[Category: Luo, Q H]]
[[Category: Dong HH]]
[[Category: Niu, Y]]
[[Category: Luo QH]]
[[Category: Qiao, W]]
[[Category: Niu Y]]
[[Category: Tang, X D]]
[[Category: Qiao W]]
[[Category: Wang, T]]
[[Category: Tang XD]]
[[Category: Xu, C H]]
[[Category: Wang T]]
[[Category: Yang, W X]]
[[Category: Xu CH]]
[[Category: Zhang, C B]]
[[Category: Yang WX]]
[[Category: Zhang, X]]
[[Category: Zhang CB]]
[[Category: Zhang, Z B]]
[[Category: Zhang X]]
[[Category: Zhang, Z Y]]
[[Category: Zhang ZB]]
[[Category: Zhu, X F]]
[[Category: Zhang ZY]]
[[Category: Abc transporter]]
[[Category: Zhu XF]]
[[Category: Gram-negative bacteria]]
[[Category: Inner membrane protein complex]]
[[Category: Lipopolysaccharide transporter]]
[[Category: Lp]]
[[Category: Lptb]]
[[Category: Lptb2fgc]]
[[Category: Lptbfg]]
[[Category: Outer membrane]]
[[Category: Transport protein]]

Latest revision as of 10:14, 22 May 2024

Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide

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