ConSurfDB vs. ConSurf: Difference between revisions

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[[2vaa]] contains three chains. Here, ConSurf colors are applied only to the alpha chain (chain A), while the beta chain (chain B) and the peptide (chain P) are shown as gray backbone traces. See also [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link|How to Insert a ConSurf Result Into a Proteopedia Green Link]].

~~'''~~ConSurfDB~~'''~~ has a result with an APD of 1.63. The sides of the groove are variable, as expected (enabling it to bind a wide range of peptide sequences). The only groove residue that is conserved at greater than level 6 is Leu5 (level 8), part of a hydrophobic pocket that binds a peptide "anchor residue". Only a handful of surface residues are highly conserved (level 8), including Trp274 involved in binding CD8.

====ConSurfDB====

ConSurfDB has a result (NOT SHOWN) with an '''APD of 1.63'''. The sides of the groove are variable, as expected (enabling it to bind a wide range of peptide sequences). The only groove residue that is conserved at greater than level 6 is Leu5 (level 8), part of a hydrophobic pocket that binds a peptide "anchor residue". Only a handful of surface residues are highly conserved (level 8), including Trp274 involved in binding CD8.

ConSurfDB vs. ConSurf: Difference between revisions

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@@ Line 180: / Line 180: @@
 [[2vaa]] contains three chains. Here, ConSurf colors are applied only to the alpha chain (chain A), while the beta chain (chain B) and the peptide (chain P) are shown as gray backbone traces. See also [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link|How to Insert a ConSurf Result Into a Proteopedia Green Link]].
-'''ConSurfDB''' has a result with an APD of 1.63. The sides of the groove are variable, as expected (enabling it to bind a wide range of peptide sequences). The only groove residue that is conserved at greater than level 6 is Leu5 (level 8), part of a hydrophobic pocket that binds a peptide "anchor residue". Only a handful of surface residues are highly conserved (level 8), including Trp274 involved in binding CD8.
+====ConSurfDB====
+ConSurfDB has a result (NOT SHOWN) with an '''APD of 1.63'''. The sides of the groove are variable, as expected (enabling it to bind a wide range of peptide sequences). The only groove residue that is conserved at greater than level 6 is Leu5 (level 8), part of a hydrophobic pocket that binds a peptide "anchor residue". Only a handful of surface residues are highly conserved (level 8), including Trp274 involved in binding CD8.