ConSurfDB vs. ConSurf: Difference between revisions
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Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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(Tyr159 was level 6.) | (Tyr159 was level 6.) | ||
Another custom ConSurf Server job<ref name="apd0.30">Custom ConSurf Server settings for APD 0.30: UniRef90 database, excluding sequences with > 95% or < 35% identity with the query, MSA has '''250''' sequences '''closest''' to the query.</ref> gave an APD of 0.30, but levels for the above 4 groove residues were 7-8. These lower levels can be accounted for by the highest expectation value in the MSA, which was 10 to the power | Another custom ConSurf Server job<ref name="apd0.30">Custom ConSurf Server settings for APD 0.30: UniRef90 database, excluding sequences with > 95% or < 35% identity with the query, MSA has '''250''' sequences '''closest''' to the query.</ref> gave an APD of 0.30, but levels for the above 4 groove residues were 7-8. These lower levels can be accounted for by the highest expectation value<ref name="evalue" /> in the MSA, which was 10 to the power -141. In contrast, for the job with APD 0.31, the highest expectation value was 10 to the power -84. | ||
<font color="red">UPDATE IN PROGRESS:</FONT> [[User:Eric Martz|Eric Martz]] 15:02, 29 July 2024 (UTC) | <font color="red">UPDATE IN PROGRESS:</FONT> [[User:Eric Martz|Eric Martz]] 15:02, 29 July 2024 (UTC) | ||
