8rtx: Difference between revisions

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'''Unreleased structure'''


The entry 8rtx is ON HOLD  until Paper Publication
==Crystal Structure of an Anti-idiotype Fab Fragment==
<StructureSection load='8rtx' size='340' side='right'caption='[[8rtx]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8rtx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8RTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8RTX FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8rtx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8rtx OCA], [https://pdbe.org/8rtx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8rtx RCSB], [https://www.ebi.ac.uk/pdbsum/8rtx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8rtx ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Anti-immunocomplex (Anti-IC) antibodies have been used in developing noncompetitive immunoassays for detecting small molecule analytics (haptens). These antibodies bind specifically to the primary antibody in complex with hapten. Although several anti-IC antibody-based immunoassays have been developed, structural studies of these systems are very limited. In this study, we determined the crystal structures of anti-testosterone Fab220 in complex with testosterone and the corresponding anti-IC antibody FabB12. The structure of the ternary complex of testosterone, Fab220, and FabB12 was predicted using LightDock and AlphaFold. The ternary complex has a large (~ 1100 A(2)) interface between antibodies. The A-ring of the testosterone bound by Fab220 also participates in the binding of the anti-IC antibody. The structural analysis was complemented by native mass spectrometry. The affinities for testosterone (TES) and three cross-reactive steroids [dihydrotestosterone (DHT), androstenedione (A4), and dehydroepiandrosterone sulfate (DHEA-S)] were measured, and ternary complex formation was studied. The results clearly show the ternary complex formation in the solution. Although DHT showed significant cross-reactivity, A4 and DHEA-S exhibited minor cross-reactivity.


Authors: Eronen, V., Parkkinen, T., Hakulinen, N., Rouvinen, J.
Structural insights into ternary immunocomplex formation and cross-reactivity: binding of an anti-immunocomplex FabB12 to Fab220-testosterone complex.,Eronen V, Takkinen K, Torni A, Peng K, Janis J, Parkkinen T, Hakulinen N, Rouvinen J FEBS J. 2024 Aug 29. doi: 10.1111/febs.17258. PMID:39206623<ref>PMID:39206623</ref>


Description: Crystal Structure of an Anti-idiotype Fab Fragment
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Hakulinen, N]]
<div class="pdbe-citations 8rtx" style="background-color:#fffaf0;"></div>
[[Category: Eronen, V]]
== References ==
[[Category: Rouvinen, J]]
<references/>
[[Category: Parkkinen, T]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Eronen V]]
[[Category: Hakulinen N]]
[[Category: Parkkinen T]]
[[Category: Rouvinen J]]
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