5x5i: Difference between revisions
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<StructureSection load='5x5i' size='340' side='right'caption='[[5x5i]], [[Resolution|resolution]] 2.55Å' scene=''> | <StructureSection load='5x5i' size='340' side='right'caption='[[5x5i]], [[Resolution|resolution]] 2.55Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5x5i]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5I OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5x5i]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X5I FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.554Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x5i OCA], [https://pdbe.org/5x5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x5i RCSB], [https://www.ebi.ac.uk/pdbsum/5x5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x5i ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/RCDA_ECOLI RCDA_ECOLI] Regulates the expression of a number of genes involved in biofilm formation and stress response. Target genes include six stress-response transcriptional regulators: csgD, which is a master regulator of biofilm formation, appY, sxy, ycgF, fimB and rcdA itself. This indicates that a large number of genes must be regulated indirectly via these transcriptional regulators. Acts by binding to the upstream region of its target genes.<ref>PMID:23233451</ref> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
*[[RcdA|RcdA]] | *[[RcdA|RcdA]] | ||
*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli K-12]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Hirata | [[Category: Hirata A]] | ||
[[Category: Ishihama | [[Category: Ishihama A]] | ||
[[Category: Nakano | [[Category: Nakano M]] | ||
[[Category: Ogasawara | [[Category: Ogasawara H]] | ||
[[Category: Shimada | [[Category: Shimada T]] | ||
[[Category: Sugino | [[Category: Sugino H]] | ||
[[Category: Usui | [[Category: Usui M]] | ||
Latest revision as of 09:35, 23 October 2024
The X-ray crystal structure of a TetR family transcription regulator RcdA involved in the regulation of biofilm formation in Escherichia coli
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