3ign: Difference between revisions

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<StructureSection load='3ign' size='340' side='right'caption='[[3ign]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
<StructureSection load='3ign' size='340' side='right'caption='[[3ign]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3ign]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Marhv Marhv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGN FirstGlance]. <br>
<table><tr><td colspan='2'>[[3ign]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Marinobacter_nauticus_VT8 Marinobacter nauticus VT8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGN FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Maqu_2607 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=351348 MARHV])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Diguanylate_cyclase Diguanylate cyclase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.65 2.7.7.65] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ign FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ign OCA], [https://pdbe.org/3ign PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ign RCSB], [https://www.ebi.ac.uk/pdbsum/3ign PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ign ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ign FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ign OCA], [https://pdbe.org/3ign PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ign RCSB], [https://www.ebi.ac.uk/pdbsum/3ign PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ign ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A1U3W3_MARN8 A1U3W3_MARN8]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ig/3ign_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ig/3ign_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Diguanylate cyclase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Marhv]]
[[Category: Marinobacter nauticus VT8]]
[[Category: Acton, T B]]
[[Category: Acton TB]]
[[Category: Ciccosanti, C]]
[[Category: Ciccosanti C]]
[[Category: Foote, E L]]
[[Category: Foote EL]]
[[Category: Hunt, J F]]
[[Category: Hunt JF]]
[[Category: Montelione, G T]]
[[Category: Montelione GT]]
[[Category: Structural genomic]]
[[Category: Neely H]]
[[Category: Neely, H]]
[[Category: Sahdev S]]
[[Category: Sahdev, S]]
[[Category: Seetharaman J]]
[[Category: Seetharaman, J]]
[[Category: Tong L]]
[[Category: Tong, L]]
[[Category: Vorobiev S]]
[[Category: Vorobiev, S]]
[[Category: Wang H]]
[[Category: Wang, H]]
[[Category: Xiao R]]
[[Category: Xiao, R]]
[[Category: A1u3w3_marav]]
[[Category: Ggdef domain]]
[[Category: Mqr89a]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]
Retrieved from "https://proteopedia.org/3ign"