6leo: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
Line 3: Line 3:
<StructureSection load='6leo' size='340' side='right'caption='[[6leo]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
<StructureSection load='6leo' size='340' side='right'caption='[[6leo]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6leo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700085 Atcc 700085]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LEO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LEO FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LEO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LEO FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=THJ:THIOSULFATE'>THJ</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Spith_0734 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=154 ATCC 700085])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=THJ:THIOSULFATE'>THJ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6leo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6leo OCA], [http://pdbe.org/6leo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6leo RCSB], [http://www.ebi.ac.uk/pdbsum/6leo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6leo ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6leo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6leo OCA], [https://pdbe.org/6leo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6leo RCSB], [https://www.ebi.ac.uk/pdbsum/6leo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6leo ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
We have demonstrated that a bacterial membrane protein, YeeE, mediates thiosulfate uptake. Thiosulfate is used for cysteine synthesis in bacteria as an inorganic sulfur source in the global biological sulfur cycle. The crystal structure of YeeE at 2.5-A resolution reveals an unprecedented hourglass-like architecture with thiosulfate in the positively charged outer concave side. YeeE is composed of loops and 13 helices including 9 transmembrane alpha helices, most of which show an intramolecular pseudo 222 symmetry. Four characteristic loops are buried toward the center of YeeE and form its central region surrounded by the nine helices. Additional electron density maps and successive molecular dynamics simulations imply that thiosulfate can remain temporally at several positions in the proposed pathway. We propose a plausible mechanism of thiosulfate uptake via three important conserved cysteine residues of the loops along the pathway.
Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.,Tanaka Y, Yoshikaie K, Takeuchi A, Ichikawa M, Mori T, Uchino S, Sugano Y, Hakoshima T, Takagi H, Nonaka G, Tsukazaki T Sci Adv. 2020 Aug 26;6(35):eaba7637. doi: 10.1126/sciadv.aba7637. eCollection, 2020 Aug. PMID:32923628<ref>PMID:32923628</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6leo" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 700085]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Sugano, Y]]
[[Category: Sugano Y]]
[[Category: Takeuchi, A]]
[[Category: Takeuchi A]]
[[Category: Tanaka, Y]]
[[Category: Tanaka Y]]
[[Category: Tsukazaki, T]]
[[Category: Tsukazaki T]]
[[Category: Uchino, S]]
[[Category: Uchino S]]
[[Category: Yoshikaie, K]]
[[Category: Yoshikaie K]]
[[Category: Transmembrane]]
[[Category: Transport protein]]
[[Category: Transporter]]

Latest revision as of 11:10, 30 October 2024

Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila

6leo, resolution 2.52Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=6leo&oldid=4250799"