2koi: Difference between revisions

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==Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state==
==Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state==
<StructureSection load='2koi' size='340' side='right'caption='[[2koi]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2koi' size='340' side='right'caption='[[2koi]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2koi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyanobacteria_bacterium_yellowstone_b' Cyanobacteria bacterium yellowstone b']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KOI FirstGlance]. <br>
<table><tr><td colspan='2'>[[2koi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_sp._JA-2-3B'a(2-13) Synechococcus sp. JA-2-3B'a(2-13)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KOI FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYB_2465 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=321332 Cyanobacteria bacterium Yellowstone B'])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2koi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2koi OCA], [https://pdbe.org/2koi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2koi RCSB], [https://www.ebi.ac.uk/pdbsum/2koi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2koi ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2koi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2koi OCA], [https://pdbe.org/2koi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2koi RCSB], [https://www.ebi.ac.uk/pdbsum/2koi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2koi ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q2JIZ5_SYNJB Q2JIZ5_SYNJB]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/2koi_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/2koi_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Cyanobacteria bacterium yellowstone b']]
[[Category: Histidine kinase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Cornilescu CC]]
[[Category: Cornilescu, C C]]
[[Category: Cornilescu G]]
[[Category: Cornilescu, G]]
[[Category: Markley JL]]
[[Category: Markley, J L]]
[[Category: Ulijasz AT]]
[[Category: Ulijasz, A T]]
[[Category: Vierstra RD]]
[[Category: Vierstra, R D]]
[[Category: Bacteriophytochrome]]
[[Category: Cesg]]
[[Category: Cyanobacterial phytochrome]]
[[Category: Gaf domain]]
[[Category: Kinase]]
[[Category: Pcb]]
[[Category: Phosphoprotein]]
[[Category: Phycocyanobilin]]
[[Category: Phytochrome]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]
Retrieved from "https://proteopedia.org/2koi"