How to predict structures with AlphaFold: Difference between revisions
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If you are interested in complexes or alternate conformations, please see ColabFold instructions in the 2023 paper by Kim ''et al.'' <ref name="kim2023">[https://protocolexchange.researchsquare.com/article/pex-2490/v1 Easy and accurate protein structure prediction using ColabFold], 2023, Kim ''et al.'' (DeepMind Team).</ref> | If you are interested in complexes or alternate conformations, please see ColabFold instructions in the 2023 paper by Kim ''et al.'' <ref name="kim2023">[https://protocolexchange.researchsquare.com/article/pex-2490/v1 Easy and accurate protein structure prediction using ColabFold], 2023, Kim ''et al.'' (DeepMind Team).</ref> | ||
==Submitting A Sequence== | ==Instructions for ColabFold== | ||
This procedure was written in 2022. | |||
===Submitting A Sequence=== | |||
First, check the [https://alphafold.ebi.ac.uk/ AlphaFold Database] for the protein of interest. If its structure has already been predicted there, download it, and skip to [[#Interpreting Results|Interpreting Results]] below. Otherwise ... | First, check the [https://alphafold.ebi.ac.uk/ AlphaFold Database] for the protein of interest. If its structure has already been predicted there, download it, and skip to [[#Interpreting Results|Interpreting Results]] below. Otherwise ... | ||
