Converting AlphaFold3 CIF to PDB: Difference between revisions

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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, Bureaucrats, journal, Administrators
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In 2024, [http://firstglance.jmol.org FirstGlance in Jmol] requires the older [[PDB format]]. If you wish to display AlphaFold3 predicted structures in FirstGlance, here is how to convert them to PDB format:
In 2024, [http://firstglance.jmol.org FirstGlance in Jmol] requires the older [[PDB format]]. If you wish to display AlphaFold3 predicted structures in FirstGlance, here is how to convert them to PDB format:
# Get the Jmol.jar Java application running on your computer by following the instructions at [[Jmol/Application]].
# Get the Jmol.jar Java application running on your computer by following the instructions at [[Jmol/Application]].
# Create a working folder (directory), and put Jmol.jar in it.
# Download the zip file from the [https://alphafoldserver.com AlphaFold3 Server].
# Double-click the zip file to unzip it.
# Drag the file with a name ending '''_model_0.cif''' into your working folder.<ref name="best">Each job produces 5 .cif files. The file with a name ending _model_0.cif is one of those with the highest pTM quality score.</ref>
==Notes==
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