How to predict structures with AlphaFold: Difference between revisions
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**Predicted models are in [[Mmcif format|mmCIF format]] only. To convert to [[PDB format]] for use in [[FirstGlance in Jmol|FirstGlance]], see [[Converting AlphaFold3 CIF to PDB]]. | **Predicted models are in [[Mmcif format|mmCIF format]] only. To convert to [[PDB format]] for use in [[FirstGlance in Jmol|FirstGlance]], see [[Converting AlphaFold3 CIF to PDB]]. | ||
**To easily obtain average [[pLDDT]] (predicted confidence) for a range of residues, see [[FirstGlance/How to get average pLDDT from AlphaFold models]]. | **To easily obtain average [[pLDDT]] (predicted confidence) for a range of residues, see [[FirstGlance/How to get average pLDDT from AlphaFold models]]. | ||
**See also [[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]]. | **See also [[#Visualizing Predicted Structures]] and [[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]]. | ||
* 2024<ref name="rfaa">PMID: 38452047</ref>: RosettaFold All-Atom (RFAA) predicts multimers of protein and nucleic acids with ligands. From the Baker team<ref name="rfaa" />. [https://neurosnap.ai/service/RoseTTAFold%20All-Atom A free server limited to very small numbers of jobs is available from Neurosnap]. | * 2024<ref name="rfaa">PMID: 38452047</ref>: RosettaFold All-Atom (RFAA) predicts multimers of protein and nucleic acids with ligands. From the Baker team<ref name="rfaa" />. [https://neurosnap.ai/service/RoseTTAFold%20All-Atom A free server limited to very small numbers of jobs is available from Neurosnap]. | ||
