How to predict structures with AlphaFold: Difference between revisions
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Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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You can easily visualize | You can easily visualize | ||
* Estimated confidence/pLDDT by touching an atom | * Estimated confidence/pLDDT by touching an atom | ||
* Average confidence/pLDDT for the entire model, or for [[FirstGlance/How to get average pLDDT from AlphaFold models|a specified sequence range]]. | * '''Average confidence/pLDDT'' ("reliability") for the entire model, or for [[FirstGlance/How to get average pLDDT from AlphaFold models|a specified sequence range]]. | ||
* Secondary structure (Views tab) | * Secondary structure (Views tab) | ||
* Distribution of hydrophobic vs. polar residues (Views tab: integral membrane proteins will have large hydrophobic surfaces while soluble proteins will have hydrophobic cores revealed by the ''Slab'' button) | * Distribution of hydrophobic vs. polar residues (Views tab: integral membrane proteins will have large hydrophobic surfaces while soluble proteins will have hydrophobic cores revealed by the ''Slab'' button) | ||
