3bee: Difference between revisions

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<StructureSection load='3bee' size='340' side='right'caption='[[3bee]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='3bee' size='340' side='right'caption='[[3bee]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3bee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEE FirstGlance]. <br>
<table><tr><td colspan='2'>[[3bee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEE FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP1931 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bee OCA], [https://pdbe.org/3bee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bee RCSB], [https://www.ebi.ac.uk/pdbsum/3bee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bee ProSAT], [https://www.topsan.org/Proteins/MCSG/3bee TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bee OCA], [https://pdbe.org/3bee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bee RCSB], [https://www.ebi.ac.uk/pdbsum/3bee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bee ProSAT], [https://www.topsan.org/Proteins/MCSG/3bee TOPSAN]</span></td></tr>
</table>
</table>
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bee_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bee_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Vibpa]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Abdullah, J]]
[[Category: Abdullah J]]
[[Category: Chang, C]]
[[Category: Chang C]]
[[Category: Hatzos, C]]
[[Category: Hatzos C]]
[[Category: Joachimiak, A]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Putaive yfre protein]]
[[Category: Tpr repeat]]
[[Category: Unknown function]]
[[Category: Vibrio parahaemolyticus]]

Latest revision as of 01:37, 21 November 2024

Crystal structure of putative YfrE protein from Vibrio parahaemolyticus

3bee, resolution 2.15Å

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