6wps: Difference between revisions

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<StructureSection load='6wps' size='340' side='right'caption='[[6wps]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
<StructureSection load='6wps' size='340' side='right'caption='[[6wps]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6wps]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/2019-ncov 2019-ncov] and [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WPS FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WPS FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">S, 2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2697049 2019-nCoV])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wps OCA], [https://pdbe.org/6wps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wps RCSB], [https://www.ebi.ac.uk/pdbsum/6wps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wps ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wps OCA], [https://pdbe.org/6wps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wps RCSB], [https://www.ebi.ac.uk/pdbsum/6wps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wps ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a newly emerged coronavirus that is responsible for the current pandemic of coronavirus disease 2019 (COVID-19), which has resulted in more than 3.7 million infections and 260,000 deaths as of 6 May 2020(1,2). Vaccine and therapeutic discovery efforts are paramount to curb the pandemic spread of this zoonotic virus. The SARS-CoV-2 spike (S) glycoprotein promotes entry into host cells and is the main target of neutralizing antibodies. Here we describe several monoclonal antibodies that target the S glycoprotein of SARS-CoV-2, which we identified from memory B cells of an individual who was infected with severe acute respiratory syndrome coronavirus (SARS-CoV) in 2003. One antibody (named S309) potently neutralizes SARS-CoV-2 and SARS-CoV pseudoviruses as well as authentic SARS-CoV-2, by engaging the receptor-binding domain of the S glycoprotein. Using cryo-electron microscopy and binding assays, we show that S309 recognizes an epitope containing a glycan that is conserved within the Sarbecovirus subgenus, without competing with receptor attachment. Antibody cocktails that include S309 in combination with other antibodies that we identified further enhanced SARS-CoV-2 neutralization, and may limit the emergence of neutralization-escape mutants. These results pave the way for using S309 and antibody cocktails containing S309 for prophylaxis in individuals at a high risk of exposure or as a post-exposure therapy to limit or treat severe disease.
Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody.,Pinto D, Park YJ, Beltramello M, Walls AC, Tortorici MA, Bianchi S, Jaconi S, Culap K, Zatta F, De Marco A, Peter A, Guarino B, Spreafico R, Cameroni E, Case JB, Chen RE, Havenar-Daughton C, Snell G, Telenti A, Virgin HW, Lanzavecchia A, Diamond MS, Fink K, Veesler D, Corti D Nature. 2020 Jul;583(7815):290-295. doi: 10.1038/s41586-020-2349-y. Epub 2020 May, 18. PMID:32422645<ref>PMID:32422645</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6wps" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Antibody 3D structures|Antibody 3D structures]]
*[[Antibody 3D structures|Antibody 3D structures]]
*[[3D structures of human antibody|3D structures of human antibody]]
*[[3D structures of human antibody|3D structures of human antibody]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 2019-ncov]]
[[Category: Human]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Beltramello, M]]
[[Category: Beltramello M]]
[[Category: Bianchi, S]]
[[Category: Bianchi S]]
[[Category: Cameroni, E]]
[[Category: Cameroni E]]
[[Category: Case, J B]]
[[Category: Case JB]]
[[Category: Chen, R E]]
[[Category: Chen RE]]
[[Category: Corti, D]]
[[Category: Corti D]]
[[Category: Culap, K]]
[[Category: Culap K]]
[[Category: Diamond, M S]]
[[Category: De Marco A]]
[[Category: Fink, K]]
[[Category: Diamond MS]]
[[Category: Guarino, B]]
[[Category: Fink K]]
[[Category: Havenar-Daughton, C]]
[[Category: Guarino B]]
[[Category: Jaconi, S]]
[[Category: Havenar-Daughton C]]
[[Category: Lanzavecchia, A]]
[[Category: Jaconi S]]
[[Category: Marco, A De]]
[[Category: Lanzavecchia A]]
[[Category: Park, Y J]]
[[Category: Park YJ]]
[[Category: Peter, A]]
[[Category: Peter A]]
[[Category: Pinto, D]]
[[Category: Pinto D]]
[[Category: Structural genomic]]
[[Category: Snell G]]
[[Category: Snell, G]]
[[Category: Spreafico R]]
[[Category: Spreafico, R]]
[[Category: Tortorici MA]]
[[Category: Tortorici, M A]]
[[Category: Veesler D]]
[[Category: Veesler, D]]
[[Category: Virgin HW]]
[[Category: Virgin, H W]]
[[Category: Walls AC]]
[[Category: Walls, A C]]
[[Category: Zatta F]]
[[Category: Zatta, F]]
[[Category: Fusion protein]]
[[Category: Neutralizing antibody]]
[[Category: Sarbecovirus]]
[[Category: Sars-cov]]
[[Category: Sars-cov-2]]
[[Category: Spike glycoprotein]]
[[Category: Ssgcid]]
[[Category: Viral protein-immune system complex]]

Latest revision as of 05:56, 21 November 2024

Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment

6wps, resolution 3.10Å

Drag the structure with the mouse to rotate

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