DNA polymerase 3D structures: Difference between revisions
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*DNA polymerase III subunit beta or sliding clamp | *DNA polymerase III subunit beta or sliding clamp | ||
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit | **[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit beta<br /> | ||
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit | **[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit beta (mutant) <br /> | ||
**[[3d1e]] - EcDpo III subunit | **[[3d1e]] - EcDpo III subunit beta + EcDpo II C-terminal<br /> | ||
**[[1unn]] - EcDpo III subunit | **[[1unn]] - EcDpo III subunit beta + EcDpo IV little finger<br /> | ||
**[[2avt]] - Dpo III beta subunit – ''Streptococcus pyogenes''<br /> | |||
**[[2awa]] - Dpo III beta subunit – ''Streptococcus pneumoniae''<br /> | |||
**[[4trt]] – DrDpo III beta subunit – ''Deinococcus radiodurans''<br /> | |||
**[[2avt]] - Dpo III | |||
**[[2awa]] - Dpo III | |||
**[[4trt]] – DrDpo III | |||
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br /> | **[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br /> | ||
**[[1vpk]] - TmDpo III | **[[1vpk]] - TmDpo III beta subunit<br /> | ||
**[[3t0p]] - Dpo III | **[[3t0p]] - Dpo III beta subunit – ''Eubacterium rectale''<br /> | ||
**[[6ap4]] - Dpo III | **[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br /> | ||
**[[6amq]] - Dpo III | **[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br /> | ||
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III | **[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br /> | ||
**[[5w7z]] - RcDpo III | **[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br /> | ||
**[[6man]] - Dpo III | **[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br /> | ||
**[[6d46]] - RtDpo III | **[[6d46]] - RtDpo III beta subunit – ''Rickettsia typhi''<br /> | ||
**[[6dlk]] - RrDpo III | **[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br /> | ||
**[[6d47]] - MmDpo III | **[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br /> | ||
**[[1jqj]], [[1jql]] - EcDpo III | **[[1jqj]], [[1jql]] - EcDpo III subunits beta, delta(mutant) <br /> | ||
**[[4tr6]] - Pol III | **[[4tr6]] - Pol III beta subunit – ''Bacillus subtilis''<br /> | ||
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III | **[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br /> | ||
**[[4tr8]], [[6ams]] - PsaPol III | **[[4tr8]], [[6ams]] - PsaPol III beta subunit – ''Pseudomonas aeruginosa''<br /> | ||
**[[6pth]] - PsaPol III | **[[6pth]] - PsaPol III beta subunit + griselimycin<br /> | ||
**[[4s3i]], [[4rki]] - HpPol III | **[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br /> | ||
**[[6aig]] - Dpo III | **[[6aig]] - Dpo III beta subunit – ''Aeropyrum pernix''<br /> | ||
**[[6deg]] - BbDpo III | **[[6deg]] - BbDpo III beta subunit – ''Bartonella birtlesii''<br /> | ||
**[[7rzm]] - Dpo III | **[[7rzm]] - Dpo III beta subunit – ''Stenotrophomonas maltophilia''<br /> | ||
**[[8dt6]] - Dpo III | **[[8dt6]] - Dpo III beta subunit – ''Elizabethkingia anophelis''<br /> | ||
*DNA polymerase III subunit beta or sliding clamp complex | *DNA polymerase III subunit beta or sliding clamp complex | ||
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit | **[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]], [[8cix]], [[8ciy]] - EcDpo III subunit beta + inhibitor<br /> | ||
**[[3bep]] - EcDpo III subunit | **[[3bep]] - EcDpo III subunit beta + DNA<br /> | ||
**[[5x06]] - EcDpo III subunit | **[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br /> | ||
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III | **[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]], [[8pat]], [[8pay]] - EcDpo III beta subunit + polypeptide<br /> | ||
**[[6fvm]] - EcDpo III | **[[8ciz]] - EcDpo III subunit beta + peptide antibiotic <br /> | ||
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III | **[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br /> | ||
**[[5frq]] - HpPol III | **[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br /> | ||
**[[5dai]] - TkPol III | **[[5frq]] - HpPol III beta subunit + DNA ligase peptide<br /> | ||
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III | **[[5dai]] - TkPol III beta subunit + FEN-1 peptide <br /> | ||
**[[6drt]] – T4Dpo III | **[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III beta subunit + gricelimycin <br /> | ||
**[[6dj8]] – Dpo III | **[[6drt]] – T4Dpo III beta subunit + polypeptide - Enterobacteria phage T4<br /> | ||
**[[6fvo]], [[6fvn]] - MtPol III | **[[6dj8]] – Dpo III beta subunit + polypeptide – ''Borrelia burgdorferi''<br /> | ||
**[[6t7x]] - PaPol III | **[[6fvo]], [[6fvn]] - MtPol III beta subunit + P7 peptide<br /> | ||
**[[4tsz]], [[6t7y]] - PaPol III | **[[6t7x]] - PaPol III beta subunit <br /> | ||
**[[6t8h]] - PaPol III | **[[4tsz]], [[6t7y]] - PaPol III beta subunit + peptide<br /> | ||
**[[6djk]] - RtDpo III | **[[6t8h]] - PaPol III beta subunit + Dol II small subunit + DP2 – Cryo EM<br /> | ||
**[[6dm6]] - RcPol III | **[[6djk]] - RtDpo III beta subunit + polypeptide <br /> | ||
**[[6dly]] - MmPol III | **[[6dm6]] - RcPol III beta subunit + peptide<br /> | ||
**[[6ptv]] - RrPol III | **[[6dly]] - MmPol III beta subunit + peptide<br /> | ||
**[[6ptr]] - BbPol III | **[[6ptv]] - RrPol III beta subunit + griselimycin<br /> | ||
**[[8djq]], [[8dk9]] - Pol III | **[[6ptr]] - BbPol III beta subunit + griselimycin<br /> | ||
**[[8djq]], [[8dk9]] - Pol III beta subunit + peptide – ''Mycolicibacterium thermoresistibile''<br /> | |||
*DNA polymerase III subunit gamma | *DNA polymerase III subunit gamma | ||