DNA polymerase 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Michal Harel (talk | contribs)
No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 82: Line 82:
*DNA polymerase III subunit beta or sliding clamp
*DNA polymerase III subunit beta or sliding clamp


**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit <br />
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit beta<br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit (mutant) <br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit beta (mutant) <br />
**[[3d1e]] - EcDpo III subunit + EcDpo II C-terminal<br />
**[[3d1e]] - EcDpo III subunit beta + EcDpo II C-terminal<br />
**[[1unn]] - EcDpo III subunit + EcDpo IV little finger<br />
**[[1unn]] - EcDpo III subunit beta + EcDpo IV little finger<br />
**[[8ciz]] - EcDpo III subunit  + peptide antibiotic <br />
**[[2avt]] - Dpo III beta subunit – ''Streptococcus pyogenes''<br />
**[[8pat]], [[8pay]] - EcDpo III subunit  + peptide <br />
**[[2awa]] - Dpo III beta subunit – ''Streptococcus pneumoniae''<br />
**[[8cix]], [[8ciy]] - EcDpo III subunit  + inhibitor<br />
**[[4trt]] – DrDpo III beta subunit – ''Deinococcus radiodurans''<br />
**[[2avt]] - Dpo III subunit – ''Streptococcus pyogenes''<br />
**[[2awa]] - Dpo III subunit – ''Streptococcus pneumoniae''<br />
**[[4trt]] – DrDpo III subunit – ''Deinococcus radiodurans''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[1vpk]] - TmDpo III subunit<br />
**[[1vpk]] - TmDpo III beta subunit<br />
**[[3t0p]] - Dpo III subunit – ''Eubacterium rectale''<br />
**[[3t0p]] - Dpo III beta subunit – ''Eubacterium rectale''<br />
**[[6ap4]] - Dpo III subunit – ''Acinetobacter baumannii''<br />
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
**[[6amq]] - Dpo III subunit – ''Enterobacter cloacae''<br />
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III subunit – ''Caulobacter crescentus''<br />
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
**[[5w7z]] - RcDpo III subunit – ''Rickettsia conorii''<br />
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
**[[6man]] - Dpo III subunit – ''Rickettsia bellii''<br />
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
**[[6d46]] - RtDpo III subunit – ''Rickettsia typhi''<br />
**[[6d46]] - RtDpo III beta subunit – ''Rickettsia typhi''<br />
**[[6dlk]] - RrDpo III subunit – ''Rickettsia rickettsii''<br />
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
**[[6d47]] - MmDpo III subunit – ''Mycobacterium marinum''<br />
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
**[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br />
**[[1jqj]], [[1jql]] - EcDpo III subunits beta, delta(mutant) <br />
**[[4tr6]] - Pol III subunit – Bacillus subtilis<br />
**[[4tr6]] - Pol III beta subunit – ''Bacillus subtilis''<br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III subunit <br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
**[[4tr8]], [[6ams]] - PsaPol III subunit – ''Pseudomonas aeruginosa''<br />
**[[4tr8]], [[6ams]] - PsaPol III beta subunit – ''Pseudomonas aeruginosa''<br />
**[[6pth]] - PsaPol III subunit + griselimycin<br />
**[[6pth]] - PsaPol III beta subunit + griselimycin<br />
**[[4s3i]], [[4rki]] - HpPol III subunit – ''Helicobacter pylori''<br />
**[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br />
**[[6aig]] - Dpo III subunit – ''Aeropyrum pernix''<br />
**[[6aig]] - Dpo III beta subunit – ''Aeropyrum pernix''<br />
**[[6deg]] - BbDpo III subunit – ''Bartonella birtlesii''<br />
**[[6deg]] - BbDpo III beta subunit – ''Bartonella birtlesii''<br />
**[[7rzm]] - Dpo III subunit – ''Stenotrophomonas maltophilia''<br />
**[[7rzm]] - Dpo III beta subunit – ''Stenotrophomonas maltophilia''<br />
**[[8dt6]] - Dpo III subunit – ''Elizabethkingia anophelis''<br />
**[[8dt6]] - Dpo III beta subunit – ''Elizabethkingia anophelis''<br />


*DNA polymerase III subunit beta or sliding clamp complex
*DNA polymerase III subunit beta or sliding clamp complex


**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit + inhibitor<br />
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]], [[8cix]], [[8ciy]] - EcDpo III subunit beta + inhibitor<br />
**[[3bep]] - EcDpo III subunit + DNA<br />
**[[3bep]] - EcDpo III subunit beta + DNA<br />
**[[5x06]] - EcDpo III subunit + DnaA regulatory inactivator<br />
**[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br />
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III subunit + polypeptide<br />
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]], [[8pat]], [[8pay]] - EcDpo III beta subunit + polypeptide<br />
**[[6fvm]] - EcDpo III subunit (mutant) + P7 peptide<br />
**[[8ciz]] - EcDpo III subunit beta + peptide antibiotic <br />
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III subunit + NSAID drug <br />
**[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br />
**[[5frq]] - HpPol III subunit + DNA ligase peptide<br />
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br />
**[[5dai]] - TkPol III subunit + FEN-1 peptide <br />
**[[5frq]] - HpPol III beta subunit + DNA ligase peptide<br />
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III subunit + gricelimycin <br />
**[[5dai]] - TkPol III beta subunit + FEN-1 peptide <br />
**[[6drt]] – T4Dpo III subunit + polypeptide - Enterobacteria phage T4<br />
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III beta subunit + gricelimycin <br />
**[[6dj8]] – Dpo III subunit + polypeptide – ''Borrelia burgdorferi''<br />
**[[6drt]] – T4Dpo III beta subunit + polypeptide - Enterobacteria phage T4<br />
**[[6fvo]], [[6fvn]] - MtPol III subunit + P7 peptide<br />
**[[6dj8]] – Dpo III beta subunit + polypeptide – ''Borrelia burgdorferi''<br />
**[[6t7x]] - PaPol III subunit <br />
**[[6fvo]], [[6fvn]] - MtPol III beta subunit + P7 peptide<br />
**[[4tsz]], [[6t7y]] - PaPol III subunit + peptide<br />
**[[6t7x]] - PaPol III beta subunit <br />
**[[6t8h]] - PaPol III subunit + Dol II small subunit + DP2 – Cryo EM<br />
**[[4tsz]], [[6t7y]] - PaPol III beta subunit + peptide<br />
**[[6djk]] - RtDpo III subunit + polypeptide <br />
**[[6t8h]] - PaPol III beta subunit + Dol II small subunit + DP2 – Cryo EM<br />
**[[6dm6]] - RcPol III subunit + peptide<br />
**[[6djk]] - RtDpo III beta subunit + polypeptide <br />
**[[6dly]] - MmPol III subunit + peptide<br />
**[[6dm6]] - RcPol III beta subunit + peptide<br />
**[[6ptv]] - RrPol III subunit + griselimycin<br />
**[[6dly]] - MmPol III beta subunit + peptide<br />
**[[6ptr]] - BbPol III subunit + griselimycin<br />
**[[6ptv]] - RrPol III beta subunit + griselimycin<br />
**[[8djq]], [[8dk9]] - Pol III subunit + peptide – ''Mycolicibacterium thermoresistibile''<br />
**[[6ptr]] - BbPol III beta subunit + griselimycin<br />
**[[8djq]], [[8dk9]] - Pol III beta subunit + peptide – ''Mycolicibacterium thermoresistibile''<br />


*DNA polymerase III subunit gamma
*DNA polymerase III subunit gamma