Sandbox3H04: Difference between revisions

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'''SPRITE'''

The first structural analysis completed was SPRITE to search the structure of 3H04 for configurations of amino acid side chains with similar structure to known enzyme active sites. Resulting hits occurred with 1a8q Bromoperoxidase A1 with an RMSD of 0.13 that had three amino acid matches. A second match, 1pfp, had an RMSD of 0.15 and three different amino acid matches within the functional group. The overlapped image can be found here [[Image:3H04 overlap with 1pfp.png |~~300px~~|~~left~~|thumb|]]to view structure similarity. A third match, 1n8o, was viewed with an RMSD of 1.01 and four different amino acid matches within the functional group for better alignment with the overlap shown here[[Image:3HO4 overlap with 1n8o.png | thumb]].

The first structural analysis completed was SPRITE to search the structure of 3H04 for configurations of amino acid side chains with similar structure to known enzyme active sites. Resulting hits occurred with 1a8q Bromoperoxidase A1 with an RMSD of 0.13 that had three amino acid matches. A second match, 1pfp, had an RMSD of 0.15 and three different amino acid matches within the functional group. The overlapped image can be found here [[Image:3H04 overlap with 1pfp.png |100px|right|thumb|]]to view structure similarity. A third match, 1n8o, was viewed with an RMSD of 1.01 and four different amino acid matches within the functional group for better alignment with the overlap shown here[[Image:3HO4 overlap with 1n8o.png | thumb]].

'''Chimera'''

Sandbox3H04: Difference between revisions

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@@ Line 16: / Line 16: @@
 '''SPRITE'''
-The first structural analysis completed was SPRITE to search the structure of 3H04 for configurations of amino acid side chains with similar structure to known enzyme active sites. Resulting hits occurred with 1a8q Bromoperoxidase A1 with an RMSD of 0.13 that had three amino acid matches. A second match, 1pfp, had an RMSD of 0.15 and three different amino acid matches within the functional group. The overlapped image can be found here [[Image:3H04 overlap with 1pfp.png |300px|left|thumb|]]to view structure similarity. A third match, 1n8o, was viewed with an RMSD of 1.01 and four different amino acid matches within the functional group for better alignment with the overlap shown here[[Image:3HO4 overlap with 1n8o.png | thumb]].
+The first structural analysis completed was SPRITE to search the structure of 3H04 for configurations of amino acid side chains with similar structure to known enzyme active sites. Resulting hits occurred with 1a8q Bromoperoxidase A1 with an RMSD of 0.13 that had three amino acid matches. A second match, 1pfp, had an RMSD of 0.15 and three different amino acid matches within the functional group. The overlapped image can be found here [[Image:3H04 overlap with 1pfp.png |100px|right|thumb|]]to view structure similarity. A third match, 1n8o, was viewed with an RMSD of 1.01 and four different amino acid matches within the functional group for better alignment with the overlap shown here[[Image:3HO4 overlap with 1n8o.png | thumb]].
 '''Chimera'''