User:Matthew Chien/Sandbox 1: Difference between revisions

From Proteopedia
Jump to navigationJump to search
No edit summary
No edit summary
Line 26: Line 26:
[[Image:Ijms-22-05125-g008.jpg|thumb|400px|C1q CLR active site residues Lys58 and Lys61]]
[[Image:Ijms-22-05125-g008.jpg|thumb|400px|C1q CLR active site residues Lys58 and Lys61]]
The collagen-like region (CLR) is the location of a binding site associated with a variety of non-complement related interactions, such as the binding of phagocytes to C1q as mentioned above. However, one of the most important functions of the CLR of C1q is the activation through protease of the remainder of C1; C1r and C1s. Two equivalences of C1r and C1s are bonded C1s - C1r - C1r - C1s to comprise a tetramer that, when cleaved after the bonding of C1q to an epitope, activates the classical pathway of complement activity, promoting inflammation and phagocytosis. The active site on the CLR of C1q is proposed to be lysine residues located at position 61 on the B chain and position 58 on the A chain. These basic residues create salt bridges with associated residues on C1r, generally a glutamic acid or aspartic acid. These residues are coordinated with the Ca2+ ion present in C1q through single carboxyl oxygens, which is available for mediating through an electrostatic bond with a basic residue. Through activation, the C1r - C1r bond is broken, which induces conformational changes in C1r that subsequently cleaves C1s. <ref>PMID:29311313</ref><ref>PMID:23922389</ref><ref>PMID:1939090</ref><ref>PMID:34066122</ref>
The collagen-like region (CLR) is the location of a binding site associated with a variety of non-complement related interactions, such as the binding of phagocytes to C1q as mentioned above. However, one of the most important functions of the CLR of C1q is the activation through protease of the remainder of C1; C1r and C1s. Two equivalences of C1r and C1s are bonded C1s - C1r - C1r - C1s to comprise a tetramer that, when cleaved after the bonding of C1q to an epitope, activates the classical pathway of complement activity, promoting inflammation and phagocytosis. The active site on the CLR of C1q is proposed to be lysine residues located at position 61 on the B chain and position 58 on the A chain. These basic residues create salt bridges with associated residues on C1r, generally a glutamic acid or aspartic acid. These residues are coordinated with the Ca2+ ion present in C1q through single carboxyl oxygens, which is available for mediating through an electrostatic bond with a basic residue. Through activation, the C1r - C1r bond is broken, which induces conformational changes in C1r that subsequently cleaves C1s. <ref>PMID:29311313</ref><ref>PMID:23922389</ref><ref>PMID:1939090</ref><ref>PMID:34066122</ref>
== Structural Highlights ==
C1q is a 460 kDa protein complex composed of six collagen-like stems, each linked to a globular head. This produces a bouquet-like structure shown below. Each collagen-like stem is comprised of three separate chains that form a triple helix structure, totaling 18 polypeptide chains of three different types; A, B, and C. Each chain has an N-terminus in at the CLR and a <scene name='10/1078778/C-termini/1'>C-terminus</scene> at the globular head. Disulfide bonds link the N-terminus ends of A and B chains, with these dimers being linked to the C chains noncovalently. [[Image:Schematic-representation-of-structural-organization-of-human-C1q-and-of-C1-assembly-A.jpeg|thumb|right|520px|N-terminus of C1q]] These form the triple helices that attach to the globular head, making the bouquet-like structure. The globular heads are comprised of three independently folding domains, making them heterotrimeric. The globular heads are very compact and held together by both electrostatic and nonpolar interactions. Each globular head contains a <scene name='10/1078778/Calcium_ion/1'>calcium ion</scene>, responsible for target recognition properties and electrostatic stability. At pH 7.4, the Calcium ion is lost from the globular head, which contributes to IgG binding site recognition. <ref>PMID:23650384</ref><ref>PMID:16245926</ref>
[[Image:Frame apngframe1.png]]


== Disease ==
== Disease ==
Line 34: Line 38:
An overabundance of C1q has shown to correlate with the development of neurodegenerative diseases and loss of cognitive function. Higher age groups are seen to have larger levels of C1q, especially in their brain. This buildup mainly occurs because of poorer activity in synaptic clearing of C1q bound to neuronal RNA-binding proteins called neuronal ribonucleoprotein complexes, affecting protein homeostasis in the brain and decreasing cognitive function. C1q is involved in pruning synapses in developing brains by tagging the synapses for phagocytosis by microglia. Elevated concentrations of C1q in the synapses has been correlated with overactivity of microglia when provoked by brain injury or a series of strokes. Most cells in the body have complement inhibiting agents to regulate complement activity, whereas nerve cells lack these complement inhibitors. Astrocytes are known to secrete C1q when provoked by infections or damage to the central nervous system, and an overproduction of these can lead to over inflammation in the brain by the complement cascade and synapses loss, both fundamental components of Alzheimer's disease and various other neurodegenerative diseases. <ref>PMID:23946404</ref><ref>PMID:38942014</ref><ref>PMID:37033981</ref>
An overabundance of C1q has shown to correlate with the development of neurodegenerative diseases and loss of cognitive function. Higher age groups are seen to have larger levels of C1q, especially in their brain. This buildup mainly occurs because of poorer activity in synaptic clearing of C1q bound to neuronal RNA-binding proteins called neuronal ribonucleoprotein complexes, affecting protein homeostasis in the brain and decreasing cognitive function. C1q is involved in pruning synapses in developing brains by tagging the synapses for phagocytosis by microglia. Elevated concentrations of C1q in the synapses has been correlated with overactivity of microglia when provoked by brain injury or a series of strokes. Most cells in the body have complement inhibiting agents to regulate complement activity, whereas nerve cells lack these complement inhibitors. Astrocytes are known to secrete C1q when provoked by infections or damage to the central nervous system, and an overproduction of these can lead to over inflammation in the brain by the complement cascade and synapses loss, both fundamental components of Alzheimer's disease and various other neurodegenerative diseases. <ref>PMID:23946404</ref><ref>PMID:38942014</ref><ref>PMID:37033981</ref>


== Structural Highlights ==
C1q is a 460 kDa protein complex composed of six collagen-like stems, each linked to a globular head. This produces a bouquet-like structure shown below. Each collagen-like stem is comprised of three separate chains that form a triple helix structure, totaling 18 polypeptide chains of three different types; A, B, and C. Each chain has an N-terminus in at the CLR and a <scene name='10/1078778/C-termini/1'>C-terminus</scene> at the globular head. Disulfide bonds link the N-terminus ends of A and B chains, with these dimers being linked to the C chains noncovalently. [[Image:Schematic-representation-of-structural-organization-of-human-C1q-and-of-C1-assembly-A.jpeg|thumb|right|520px|N-terminus of C1q]] These form the triple helices that attach to the globular head, making the bouquet-like structure. The globular heads are comprised of three independently folding domains, making them heterotrimeric. The globular heads are very compact and held together by both electrostatic and nonpolar interactions. Each globular head contains a <scene name='10/1078778/Calcium_ion/1'>calcium ion</scene>, responsible for target recognition properties and electrostatic stability. At pH 7.4, the Calcium ion is lost from the globular head, which contributes to IgG binding site recognition. <ref>PMID:23650384</ref><ref>PMID:16245926</ref>
[[Image:Frame apngframe1.png]]
== Additional Resources ==
== Additional Resources ==
*[https://www.youtube.com/watch?v=IUDSWPvfHgU Classical Pathway Activation] animation of C1q binding to IgG, initiating the classical pathway of the complement system.
*[https://www.youtube.com/watch?v=IUDSWPvfHgU Classical Pathway Activation] animation of C1q binding to IgG, initiating the classical pathway of the complement system.

Revision as of 14:20, 29 April 2025

Complement Component 1q

crystallographic structure of C1q Globular Head 2JG9

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Matthew Chien