Endonuclease 3D structures: Difference between revisions

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**[[5dlj]], [[5dqt]], [[5dqu]], [[5dqz]], [[5ds4]], [[5ds5]], [[5ds6]], [[5vvl]], [[5vvk]], [[5vvj]] – EcCas1 + EcCas2 + DNA<br />
**[[5dlj]], [[5dqt]], [[5dqu]], [[5dqz]], [[5ds4]], [[5ds5]], [[5ds6]], [[5vvl]], [[5vvk]], [[5vvj]] – EcCas1 + EcCas2 + DNA<br />
**[[5wfe]] – EcCas1 + EcCas2 + IHF-a + IHF-b + DNA<br />
**[[5wfe]] – EcCas1 + EcCas2 + IHF-a + IHF-b + DNA<br />
**[[5xvp]], [[5xvo]], [[5xvn]] – Cas1 + Cas2 + DNA – ''Enterococcus faecalis''<br />
**[[5xvp]], [[5xvo]], [[5xvn]] – Cas1 + Cas2 + DNA – Enterococcus faecalis<br />
**[[7cr6]], [[7cr8]] – Cas1 + Cas2 + DNA – ''Synechocystis''<br />
**[[7cr6]], [[7cr8]] – Cas1 + Cas2 + DNA – Synechocystis<br />
**[[8pk1]] – StCas1 + Cas2 + DNA – Streptococcus thermophilus<br />
**[[8hi1]], [[8q2n]] – StCas1 + Cas2 + DNA – Cryo EM<br />
**[[8flj]] – PaCas1 + Cas2 + DNA – Cryo EM<br />
**[[6qxt]], [[6qxf]] – GsCas1 (mutant) + EcCas2 + Csn2 + DNA – Cryo EM<br />
**[[6qxt]], [[6qxf]] – GsCas1 (mutant) + EcCas2 + Csn2 + DNA – Cryo EM<br />
**[[6kdv]] – TtCas1 + DNA <br />
**[[6kdv]] – TtCas1 + DNA <br />
**[[6opm]] – Cas1 + DNA – ''Methanosarcina mazei''<br />
**[[6opm]] – Cas1 + DNA – Methanosarcina mazei<br />
**[[7mi9]] – GsuCas1 + Cas2 + DNA – ''Geobacter sulfurreducens''<br />
**[[7mi9]] – GsuCas1 + Cas2 + DNA – Geobacter sulfurreducens<br />
**[[7mi5]], [[7mid]] – GsuCas1 + Cas2 + Cas4 + DNA <br />
**[[7mi5]], [[7mid]] – GsuCas1 + Cas2 + Cas4 + DNA <br />
**[[7mi4]], [[7mib]] – GsuCas1 + Cas2 + Cas4 + DNA – Cryo EM<br />
**[[7mi4]], [[7mib]] – GsuCas1 + Cas2 + Cas4 + DNA – Cryo EM<br />
**[[8d3l]], [[8d3m]], [[8d3p]], [[8d3q]] – Cas1 + Cas2 + Cas4 + DNA – ''Alkalihalobacillus halodurans'' – Cryo EM<br />
**[[8d3l]], [[8d3m]], [[8d3p]], [[8d3q]] – Cas1 + Cas2 + Cas4 + DNA – Alkalihalobacillus halodurans – Cryo EM<br />
**[[8g9u]] – NlCas3 + Csd1 + Csd2 + Csy3 + pre-crrna processing ENN + RNA + DNA – Cryo EM<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA - Cryo EM<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA – Cryo EM<br />
**[[6b48]], [[6b47]], [[6b46]], [[6b45]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + RNA - Cryo EM<br />
**[[6b48]], [[6b47]], [[6b46]], [[6b45]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + RNA – Cryo EM<br />
**[[6b44]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + DNA - Cryo EM<br />
**[[6b44]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + DNA – Cryo EM<br />
**[[6ne0]] – PaCsa6/Csy4 + Csy1 + Csy2 + Csy3 + DNA + RNA – Cryo EM<br />
**[[6ne0]] – PaCas6/Csy4 + Csy1 + Csy2 + Csy3 + DNA + RNA – Cryo EM<br />
**[[3pkm]] – PfCas6 + RNA<br />
**[[3pkm]] – PfCas6 + RNA<br />
**[[2y8w]], [[2y8y]], [[3qrp]], [[3qrq]], [[2qrr]] – TtCas6e (Cse3) + RNA<br />
**[[2y8w]], [[2y8y]], [[3qrp]], [[3qrq]], [[2qrr]] – TtCas6e (Cse3) + RNA<br />
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**[[4zt0]], [[7ox8]], [[7ox9]] - SpCas9 + RNA <br />
**[[4zt0]], [[7ox8]], [[7ox9]] - SpCas9 + RNA <br />
**[[4zt9]] - SpCas9 (mutant) + RNA <br />
**[[4zt9]] - SpCas9 (mutant) + RNA <br />
**[[7qqo]], [[7qqp]], [[7qqq]], [[7qqr]], [[7qqs]], [[7qqt]], [[7qqu]], [[7qqv]], [[7qqw]], [[7qqx]], [[7qqz]], [[7qr0]], [[7qr1]], [[7qr5]], [[7qr7]], [[7qr8]], [[7s4u]], [[7s4v]],[[7z4c]], [[7z4d]], [[7z4e]], [[7z4g]], [[7z4h]], [[7z4i]], [[7z4j]],[[7z4k]], [[7z4l]]] - SpCas9 + DNA <br />
**[[7qqo]], [[7qqp]], [[7qqq]], [[7qqr]], [[7qqs]], [[7qqt]], [[7qqu]], [[7qqv]], [[7qqw]], [[7qqx]], [[7qqz]], [[7qr0]], [[7qr1]], [[7qr5]], [[7qr7]], [[7qr8]], [[7s4u]], [[7s4v]],[[7z4c]], [[7z4d]], [[7z4e]], [[7z4g]], [[7z4h]], [[7z4i]], [[7z4j]], [[7z4k]], [[7z4l]], [[8t79]] - SpCas9 + DNA <br />
**[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]], [[7ox7]], [[7oxa]], [[7s36]], [[7s37]], [[7s38]], [[7s3h]], [[7s4x]], [[7zo1]] - SpCas9 + RNA + DNA<br />
**[[8t7s]], [[8u3y]] - SpCas9 + DNA – Cryo EM<br />
**[[7v59]] - SpCas9 + RNA + DNA – Cryo EM<br />
**[[5f9r]], [[6k4p]], [[6k4q]], [[6o0x]], [[6o0y]], [[6o0z]], [[7ox7]], [[7oxa]], [[7s36]], [[7s37]], [[7s38]], [[7s3h]], [[7s4x]], [[7zo1]], [[8kah]], [[8kai]], [[8kaj]], [[8kak]], [[8kal]], [[8kam]] - SpCas9 + RNA + DNA<br />
**[[8kag]], [[9b2k]], [[9cgu]] - SpCas9 + RNA – Cryo EM<br />
**[[7v59]], [[8fzt]], [[8g1i]], [[8spq]], [[8sq9]], [[8srs]], [[8t6o]], [[8t6p]], [[8t6s]], [[8t6t]], [[8t6x]], [[8t6y]], [[8t76]], [[8t77]], [[8t78]], [[8t81]], [[8tzz]], [[8wus]], [[8wut]], [[8wuu]], [[8wuv]], [[8ygj]], [[9c9p]] - SpCas9 + RNA + DNA – Cryo EM<br />
**[[8yny]] - SpCas9 + RNA + DNA + nucleosome – Cryo EM<br />
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[6ai6]], [[6k3z]], [[6k4s]], [[6k4u]], [[6k57]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]], [[6ai6]], [[6k3z]], [[6k4s]], [[6k4u]], [[6k57]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
**[[5xbl]] - SpCas9 + associated protein + RNA <br />
**[[5xbl]] - SpCas9 + associated protein + RNA <br />
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**[[5vw1]] - SpCas9 + AcriiA4 + RNA <br />
**[[5vw1]] - SpCas9 + AcriiA4 + RNA <br />
**[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br />
**[[6mcc]], [[5vzl]], [[6mcb]] - SpCas9 + AcriiA4 + RNA – Cryo EM<br />
**[[8ye6]] - SpCas9 + A32 + RNA – Cryo EM<br />
**[[6vpc]] - SpCas9 + TADA-8E + RNA + DNA<br />
**[[6vpc]] - SpCas9 + TADA-8E + RNA + DNA<br />
**[[5vgb]] - NmCas9 + AcriiC1 – ''Neisseria meningitidis'' <br />
**[[5vgb]], [[8if0]] - NmCas9 + AcriiC1 – Neisseria meningitidis <br />
**[[6jdx]], [[6jdj]], [[6j9m]] - NmCas9 + AcriiC2 <br />
**[[6jdx]], [[6jdj], [[6j9m]]] - NmCas9 + AcriiC2 <br />
**[[6j9n]] - NmCas9 + AcriiC3 <br />
**[[6j9n]], [[6jhw]] - NmCas9 + AcriiC3 <br />
**[[6jdq]] - NmCas9 + RNA <br />
**[[6jdq]] - NmCas9 + RNA <br />
**[[6jdv]], [[6je3]], [[6jfu]], [[6kc8]] - NmCas9 + RNA + DNA<br />
**[[6jdv]], [[6je3]], [[6jfu]], [[6kc8]] - NmCas9 + RNA + DNA<br />
**[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br />
**[[6kc7]] - NmCas9 (mutant) + RNA + DNA<br />
**[[6je9]] - NmCas9 + RNA + AcriiC3<br />
**[[6je9]] - NmCas9 + RNA + AcriiC3<br />
**[[8ja0]] - NmCas9 + RNA + AcriiC4 – Cryo EM<br />
**[[8hj4]] - NmCas9 + RNA + AcriiC5 – Cryo EM<br />
**[[8hj4]] - NmCas9 + RNA + AcriiC5 – Cryo EM<br />
**[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br />
**[[6je4]] - NmCas9 + RNA + DNA + AcriiC3<br />
**[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – ''Streptococcus thermophilus''<br />
**[[8hnt]] - HiCas9 + RNA + AcriiC4 - Haemophilus influenza <br />
**[[6rjd]], [[6m0v]], [[6m0w]], [[6m0x]] - StCas9 + RNA + DNA<br />
**[[8hnw]] - HiCas9 + RNA + DNA <br />
**[[8hnv]] - HiCas9 + RNA + DNA + AcriiC4 – Cryo EM<br />
**[[6rj9]], [[6rja]], [[6rjg]] - StCas9 + RNA + DNA + AcriiA6 – Streptococcus thermophilus<br />
**[[6rjd]], [[6m0v]], [[6m0w]], [[6m0x]] - StCas9 + RNA + DNA<br />
**[[8pj9]]  - StCas9 + RNA + DNA – Cryo EM<br />
**[[5x2h]], [[5x2g]] – Cas9 + RNA + DNA – ''Campylobacter jejuni''<br />
**[[5x2h]], [[5x2g]] – Cas9 + RNA + DNA – ''Campylobacter jejuni''<br />
**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br />
**[[5czz]], [[8y0d]] - SaCas9 (Csn1) + RNA + DNA <br />
**[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br />
**[[5axw]] - SaCas9 (Csn1) (mutant) + RNA + DNA <br />
**[[7enh]], [[7eni]], [[7enr]] - SaCas9 + RNA + ACRIIA <br />
**[[7enh]], [[7eni]], [[7enr]] - SaCas9 + RNA + ACRIIA <br />
**[[6joo]] - Cas9 + RNA + DNA – ''Corynebacterium diphtheriae''<br />
**[[8jft]] - SaCas9 + RNA + ACRIIA – Cryo Em<br />
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br />
**[[8jg9]] - SaCas9 + RNA + DNA + ACRIIA – Cryo Em<br />
**[[6wbr]], [[6wc0]] -  Cas9 + RNA + DNA – ''Acidothermus cellulolyticus''<br />
**[[6joo]] - Cas9 + RNA + DNA – Corynebacterium diphtheriae<br />
**[[8y0b]] - FtCas9 + RNA + DNA – ''Francisella tularensis''<br />
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA <br />
**[[6wbr]], [[6wc0]], [[8d2q]], [[8sfh]], [[8sfo]] -  AccCas9 + RNA + DNA – Acidothermus cellulolyticus<br />
**[[8d2k]], [[8d2l]], [[8d2n]], [[8d2o]], [[8d2p]], [[8sfi]] -  AccCas9 + RNA + DNA – Cryo EM<br />
**[[8ewg]] -  TcCas9 + RNA <br />
**[[9ar4]], [[9ar5]], [[9ar6]], [[9ar7]] - Cas9 + RNA + DNA – Geobacillus thermodenitrificans – Cryo EM<br />
**[[8jtr]] - GsCas9 + RNA – Cryo EM<br />
**[[8jtj]], [[8uza]], [[8uzb]] - GsCas9 + RNA + DNA – Cryo EM<br />
**[[8hud]] - Cas9 + RNA + DNA – Eubacterium ventriosum - Cryo EM<br />
**[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br />
**[[6i1l]], [[6i1k]], [[6gtg]], [[6gtf]], [[6gte]], [[6gtd]], [[6gtc]] – FtCas12a (mutant) + RNA + DNA <br />
**[[6w62]] – Cas12i + RNA – ''Lachnospiraceae bacterium'' – Cryo EM<br />
**[[8sfj]], [[8sfl]], [[8sfn]], [[8sfp]], [[8sfq]], [[8sfr]], [[9cjh]], [[9cjj]] – AcCas12a + RNA + DNA – ''Acidaminococcus''- Cryo EM<br />
**[[4u7u]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA<br />
**[[8kgf]] – Cas12a + RNA – Anaeroglobus – Cryo EM<br />
**[[8y0c]] – FtCas12a + RNA – Cryo EM<br />
**[[6w62]] – Cas12i + RNA – Lachnospiraceae bacterium – Cryo EM<br />
**[[4u7u]], [[5cd4]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA<br />
**[[4qyz]], [[5h9f]], [[5h9e]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA + DNA<br />
**[[4qyz]], [[5h9f]], [[5h9e]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA + DNA<br />
**[[5wqe]] – AaCas C2C1 + RNA – ''Alicyclobacillus acidoterrestris''<br />
**[[5wqe]] – AaCas C2C1 + RNA – ''Alicyclobacillus acidoterrestris''<br />
**[[5u34]] – AaCas C2C1 (mutant) + RNA <br />
**[[5u34]] – AaCas C2C1 (mutant) + RNA <br />
**[[5u30]], [[5u31]], [[5u33]] – AaCas C2C1 + RNA + DNA<br />
**[[5u30]], [[5u31]], [[5u33]] – AaCas C2C1 + RNA + DNA<br />
**[[5kk5]], [[5b43]] – AcCas Cpf1 + RNA + DNA – ''Acidaminococcus''<br />
**[[5kk5]], [[5b43]], [[9cji]] – AcCas Cpf1 + RNA + DNA <br />
**[[5xh7]], [[5xh6]] – AcCas Cpf1 (mutant) + RNA + DNA <br />
**[[5xh7]], [[5xh6]] – AcCas Cpf1 (mutant) + RNA + DNA <br />
**[[5ng6]] – FtCas Cpf1 + RNA  <br />
**[[5ng6]] – FtCas Cpf1 + RNA  <br />
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