9cz8: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 9cz8 is ~~ON HOLD until Paper Publication~~

==Structure of thioferritin exhibiting iron mineral nucleation, from Pyrococcus furiosis==

~~Authors~~:

== Structural highlights ==

<table><tr><td colspan='2'>[[9cz8]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9CZ8 OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9CZ8 FirstGlance].

~~Description~~:

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 1.91Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=9cz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9cz8 OCA], [https://pdbe.org/9cz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9cz8 RCSB], [https://www.ebi.ac.uk/pdbsum/9cz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9cz8 ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/DPS_PYRFU DPS_PYRFU] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It efficiently oxidizes Fe(2+) in the presence of hydrogen peroxide and stores it.

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Pyrococcus furiosus]]

[[Category: Bothner B]]

[[Category: Douglas T]]

[[Category: Gauvin CC]]

[[Category: Lawrence CM]]

[[Category: Tokmina-Lukaszewska M]]

[[Category: Waghwani HK]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9cz8 is ON HOLD  until Paper Publication
+==Structure of thioferritin exhibiting iron mineral nucleation, from Pyrococcus furiosis==
+<StructureSection load='9cz8' size='340' side='right'caption='[[9cz8]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9cz8]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9CZ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9CZ8 FirstGlance]. <br>
-Description:
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9cz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9cz8 OCA], [https://pdbe.org/9cz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9cz8 RCSB], [https://www.ebi.ac.uk/pdbsum/9cz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9cz8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPS_PYRFU DPS_PYRFU] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It efficiently oxidizes Fe(2+) in the presence of hydrogen peroxide and stores it.
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Pyrococcus furiosus]]
+[[Category: Bothner B]]
+[[Category: Douglas T]]
+[[Category: Gauvin CC]]
+[[Category: Lawrence CM]]
+[[Category: Tokmina-Lukaszewska M]]
+[[Category: Waghwani HK]]