9qev: Difference between revisions
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==A native carbonic anhydrase from Caloramator australiacus== | |||
<StructureSection load='9qev' size='340' side='right'caption='[[9qev]], [[Resolution|resolution]] 1.11Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[9qev]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Caloramator_australicus Caloramator australicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9QEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9QEV FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.11Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9qev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9qev OCA], [https://pdbe.org/9qev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9qev RCSB], [https://www.ebi.ac.uk/pdbsum/9qev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9qev ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/G0V3M6_9CLOT G0V3M6_9CLOT] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The 16S microbial community profiling of a metagenomics library from geothermal spring at Lisvori (Lesvos island, Greece) enabled the identification of a putative sequence exhibiting 95% identity to the gamma-type carbonic anhydrase (gamma-CA) from Caloramator australicus (gamma-CaCA). The sequence of gamma-CaCA was amplified by PCR, cloned, and expressed in E. coli. Activity assays showed that gamma-CaCA possesses very low, but detectable, anhydrase activity, while exhibiting no measurable esterase activity. Differential scanning fluorimetry (DSF) revealed that the enzyme shows high thermal stability with a melting temperature (T(m)) approximately 65-75 degrees C in the pH range between 5.5 and 9.0. The structure of gamma-CaCA was determined by X-ray crystallography at 1.11 A resolution, the highest resolution reported so far for a gamma-CA. The enzyme was crystallized as a trimer in the crystallographic asymmetric unit and contains three zinc-binding sites, one at each interface of neighboring subunits of the trimer. Structure-based rational design enabled the design and creation of a mutant enzyme (gamma-CaCAmut) which possessed a heptapeptide insertion at the active-site loop and two-point mutations. Kinetic analysis demonstrated that gamma-CaCAmut was successfully converted into a catalytically active esterase indicating successful activity gain through structure-guided engineering. The thermostability of gamma-CaCAmut was significantly increased, aligning with the thermostability typically observed in hyperthermostable enzymes. X-ray crystallographic analysis of the gamma-CaCAmut structure at 2.1 A resolution, provided detailed structural insights into how the mutations impact the overall enzyme structure, function, and thermostability. These findings provide valuable structural and functional insights into gamma-CAs and demonstrate a strategy for converting an inactive enzyme into a catalytically active form through rational design. | |||
Structural and functional characterization of a metagenomically derived gamma-type carbonic anhydrase and its engineering into a hyperthermostable esterase.,Bodourian CS, Imran M, Georgakis ND, Papageorgiou AC, Labrou NE Protein Sci. 2025 Dec;34(12):e70396. doi: 10.1002/pro.70396. PMID:41294346<ref>PMID:41294346</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 9qev" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Caloramator australicus]] | |||
[[Category: Large Structures]] | |||
[[Category: Mohsin I]] | |||
[[Category: Papageorgiou AC]] | |||
Latest revision as of 08:19, 11 December 2025
A native carbonic anhydrase from Caloramator australiacus
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