9hmc: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 9hmc is ~~ON HOLD until Paper Publication~~

==Crystal structure of PDE6D in complex with compound 5e==

~~Authors~~: ~~Zhang~~, R., ~~Waldmann~~, H., ~~Gasper~~, R.

== Structural highlights ==

<table><tr><td colspan='2'>[[9hmc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HMC OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9HMC FirstGlance].

~~Description~~: ~~Crystal structure~~ of ~~PDE6D in complex with compound 5e~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1IWC:4-[3,4-dimethyl-2-(4-methylphenyl)-7-oxidanylidene-pyrazolo[3,4-d]pyridazin-6-yl]-~{N}-heptyl-~{N}-(piperidin-4-ylmethyl)butane-1-sulfonamide'>A1IWC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>

[[Category: ~~Zhang,~~ R]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=9hmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hmc OCA], [https://pdbe.org/9hmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hmc RCSB], [https://www.ebi.ac.uk/pdbsum/9hmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hmc ProSAT]</td></tr>

[[Category: Waldmann, H]]

</table>

[[Category: ~~Gasper,~~ R]]

== Function ==

[https://www.uniprot.org/uniprot/PDE6D_HUMAN PDE6D_HUMAN] Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation (By similarity).

__TOC__

</StructureSection>

[[Category: Homo sapiens]]

[[Category: Large Structures]]

[[Category: Gasper R]]

[[Category: Waldmann H]]

[[Category: Zhang R]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9hmc is ON HOLD  until Paper Publication
+==Crystal structure of PDE6D in complex with compound 5e==
+<StructureSection load='9hmc' size='340' side='right'caption='[[9hmc]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-Authors: Zhang, R., Waldmann, H., Gasper, R.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9hmc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HMC FirstGlance]. <br>
-Description: Crystal structure of PDE6D in complex with compound 5e
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1IWC:4-[3,4-dimethyl-2-(4-methylphenyl)-7-oxidanylidene-pyrazolo[3,4-d]pyridazin-6-yl]-~{N}-heptyl-~{N}-(piperidin-4-ylmethyl)butane-1-sulfonamide'>A1IWC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-[[Category: Zhang, R]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9hmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hmc OCA], [https://pdbe.org/9hmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hmc RCSB], [https://www.ebi.ac.uk/pdbsum/9hmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hmc ProSAT]</span></td></tr>
-[[Category: Waldmann, H]]
+</table>
-[[Category: Gasper, R]]
+== Function ==
+[https://www.uniprot.org/uniprot/PDE6D_HUMAN PDE6D_HUMAN] Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation (By similarity).
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Gasper R]]
+[[Category: Waldmann H]]
+[[Category: Zhang R]]