AlphaFold/Index: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
||
| Line 13: | Line 13: | ||
==Interpreting Predictions== | ==Interpreting Predictions== | ||
*[[AlphaFold pLDDT and expected distance error]] | *[[AlphaFold pLDDT and expected distance error]] | ||
*[[FirstGlance/How_to_get_average_pLDDT_from_AlphaFold_models|How to get average pLDDT from AlphaFold models]]: | |||
When any subset of residues (such as a sequence range) is selected (using <i>Find</i>) in FirstGlance in Jmol, listing the found residues reports their average pLDDT. | |||
*[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | *[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | ||
*[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | *[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | ||
