Converting AlphaFold3 CIF to PDB: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 5: | Line 5: | ||
FirstGlance also makes it [[FirstGlance/How to get average pLDDT from AlphaFold models|easy to get the average pLDDT]] for any range of residues that you specify. | FirstGlance also makes it [[FirstGlance/How to get average pLDDT from AlphaFold models|easy to get the average pLDDT]] for any range of residues that you specify. | ||
In 2025, [http://firstglance.jmol.org FirstGlance in Jmol] requires the older [[PDB format]]. If you wish to display AlphaFold3 predicted structures in FirstGlance, here is how | In 2025, [http://firstglance.jmol.org FirstGlance in Jmol] requires the older [[PDB format]]. If you wish to display AlphaFold3 predicted structures in FirstGlance, here is how they can be converted to PDB format. Most* CIF-only models from the [[wwPDB]] can also be converted (see ''Caution'' below). | ||
<ol> | <ol> | ||
<li> Get the Jmol.jar Java application running on your computer by following the instructions at [[Jmol/Application]]. | <li> Get the Jmol.jar Java application running on your computer by following the instructions at [[Jmol/Application]]. | ||
