9lgr: Difference between revisions

Latest revision as of 09:13, 14 January 2026

Y-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase BIG

Structural highlights

9lgr is a 6 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.05Å
Ligands:	NA, ZN
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BIG_ARATH Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.^[1] ^[2] ^[3] ^[4] ^[5] ^[6] ^[7] ^[8] ^[9]

References

↑ Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J. BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev. 2001 Aug 1;15(15):1985-97. PMID:11485992 doi:10.1101/gad.905201
↑ Kanyuka K, Praekelt U, Franklin KA, Billingham OE, Hooley R, Whitelam GC, Halliday KJ. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. Plant J. 2003 Jul;35(1):57-70. PMID:12834402 doi:10.1046/j.1365-313x.2003.01779.x
↑ Desgagné-Penix I, Eakanunkul S, Coles JP, Phillips AL, Hedden P, Sponsel VM. The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis. Plant J. 2005 Jan;41(2):231-42. PMID:15634200 doi:10.1111/j.1365-313X.2004.02287.x
↑ López-Bucio J, Hernández-Abreu E, Sánchez-Calderón L, Pérez-Torres A, Rampey RA, Bartel B, Herrera-Estrella L. An auxin transport independent pathway is involved in phosphate stress-induced root architectural alterations in Arabidopsis. Identification of BIG as a mediator of auxin in pericycle cell activation. Plant Physiol. 2005 Feb;137(2):681-91. PMID:15681664 doi:10.1104/pp.104.049577
↑ Yamaguchi N, Suzuki M, Fukaki H, Morita-Terao M, Tasaka M, Komeda Y. CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development. Plant Cell Physiol. 2007 Sep;48(9):1275-90. PMID:17652113 doi:10.1093/pcp/pcm094
↑ Contreras-Cornejo HA, Macías-Rodríguez L, Cortés-Penagos C, López-Bucio J. Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol. 2009 Mar;149(3):1579-92. PMID:19176721 doi:10.1104/pp.108.130369
↑ Li HM, Altschmied L, Chory J. Arabidopsis mutants define downstream branches in the phototransduction pathway. Genes Dev. 1994 Feb 1;8(3):339-49. PMID:8314087 doi:10.1101/gad.8.3.339
↑ Ruegger M, Dewey E, Hobbie L, Brown D, Bernasconi P, Turner J, Muday G, Estelle M. Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects. Plant Cell. 1997 May;9(5):745-57. PMID:9165751 doi:10.1105/tpc.9.5.745
↑ Sponsel VM, Schmidt FW, Porter SG, Nakayama M, Kohlstruk S, Estelle M. Characterization of new gibberellin-responsive semidwarf mutants of arabidopsis. Plant Physiol. 1997 Nov;115(3):1009-20. PMID:9390435 doi:10.1104/pp.115.3.1009

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J. BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev. 2001 Aug 1;15(15):1985-97. PMID:11485992 doi:10.1101/gad.905201

[2] Kanyuka K, Praekelt U, Franklin KA, Billingham OE, Hooley R, Whitelam GC, Halliday KJ. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. Plant J. 2003 Jul;35(1):57-70. PMID:12834402 doi:10.1046/j.1365-313x.2003.01779.x

[3] Desgagné-Penix I, Eakanunkul S, Coles JP, Phillips AL, Hedden P, Sponsel VM. The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis. Plant J. 2005 Jan;41(2):231-42. PMID:15634200 doi:10.1111/j.1365-313X.2004.02287.x

[4] López-Bucio J, Hernández-Abreu E, Sánchez-Calderón L, Pérez-Torres A, Rampey RA, Bartel B, Herrera-Estrella L. An auxin transport independent pathway is involved in phosphate stress-induced root architectural alterations in Arabidopsis. Identification of BIG as a mediator of auxin in pericycle cell activation. Plant Physiol. 2005 Feb;137(2):681-91. PMID:15681664 doi:10.1104/pp.104.049577

[5] Yamaguchi N, Suzuki M, Fukaki H, Morita-Terao M, Tasaka M, Komeda Y. CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development. Plant Cell Physiol. 2007 Sep;48(9):1275-90. PMID:17652113 doi:10.1093/pcp/pcm094

[6] Contreras-Cornejo HA, Macías-Rodríguez L, Cortés-Penagos C, López-Bucio J. Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol. 2009 Mar;149(3):1579-92. PMID:19176721 doi:10.1104/pp.108.130369

[7] Li HM, Altschmied L, Chory J. Arabidopsis mutants define downstream branches in the phototransduction pathway. Genes Dev. 1994 Feb 1;8(3):339-49. PMID:8314087 doi:10.1101/gad.8.3.339

[8] Ruegger M, Dewey E, Hobbie L, Brown D, Bernasconi P, Turner J, Muday G, Estelle M. Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects. Plant Cell. 1997 May;9(5):745-57. PMID:9165751 doi:10.1105/tpc.9.5.745

[9] Sponsel VM, Schmidt FW, Porter SG, Nakayama M, Kohlstruk S, Estelle M. Characterization of new gibberellin-responsive semidwarf mutants of arabidopsis. Plant Physiol. 1997 Nov;115(3):1009-20. PMID:9390435 doi:10.1104/pp.115.3.1009

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9lgr is ON HOLD  until Paper Publication
+==Y-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase BIG==
+<StructureSection load='9lgr' size='340' side='right'caption='[[9lgr]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-Authors: Yang, W.S., Lee, J., Song, H.K.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9lgr]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9LGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9LGR FirstGlance]. <br>
-Description: Y-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase BIG
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[Category: Yang, W.S]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9lgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9lgr OCA], [https://pdbe.org/9lgr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9lgr RCSB], [https://www.ebi.ac.uk/pdbsum/9lgr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9lgr ProSAT]</span></td></tr>
-[[Category: Song, H.K]]
+</table>
-[[Category: Lee, J]]
+== Function ==
+[https://www.uniprot.org/uniprot/BIG_ARATH BIG_ARATH] Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.<ref>PMID:11485992</ref> <ref>PMID:12834402</ref> <ref>PMID:15634200</ref> <ref>PMID:15681664</ref> <ref>PMID:17652113</ref> <ref>PMID:19176721</ref> <ref>PMID:8314087</ref> <ref>PMID:9165751</ref> <ref>PMID:9390435</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Arabidopsis thaliana]]
+[[Category: Large Structures]]
+[[Category: Lee J]]
+[[Category: Song HK]]
+[[Category: Yang WS]]

9lgr: Difference between revisions

Latest revision as of 09:13, 14 January 2026

Y-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase BIG

Structural highlights

Function

References

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