9vut: Difference between revisions
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==Crystal structure of SADS-CoV main protease (Lys35Val)== | |||
<StructureSection load='9vut' size='340' side='right'caption='[[9vut]], [[Resolution|resolution]] 2.14Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[9vut]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Swine_acute_diarrhea_syndrome_coronavirus Swine acute diarrhea syndrome coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9VUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9VUT FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.14Å</td></tr> | |||
[[Category: | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9vut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9vut OCA], [https://pdbe.org/9vut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9vut RCSB], [https://www.ebi.ac.uk/pdbsum/9vut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9vut ProSAT]</span></td></tr> | ||
[[Category: | </table> | ||
[[Category: Lei | == Function == | ||
[https://www.uniprot.org/uniprot/A0A2P1G738_9ALPC A0A2P1G738_9ALPC] Forms a primer, NSP9-pU, which is utilized by the polymerase for the initiation of RNA chains. Interacts with ribosome signal recognition particle RNA (SRP). Together with NSP8, suppress protein integration into the cell membrane, thereby disrupting host immune defenses.[ARBA:ARBA00043928] RNA-directed RNA polymerase that catalyzes the transcription of viral genomic and subgenomic RNAs. Acts in complex with nsp7 and nsp8 to transcribe both the minus and positive strands of genomic RNA. The kinase-like NiRAN domain of NSP12 attaches one or more nucleotides to the amino terminus of NSP9, forming a covalent RNA-protein intermediate that serves as transcription/replication primer. Subgenomic RNAs (sgRNAs) are formed by discontinuous transcription: The polymerase has the ability to pause at transcription-regulating sequences (TRS) and jump to the leader TRS, resulting in a major deletion. This creates a series of subgenomic RNAs that are replicated, transcribed and translated. In addition, Nsp12 is a subunit of the viral RNA capping enzyme that catalyzes the RNA guanylyltransferase reaction for genomic and sub-genomic RNAs. Subsequently, the NiRAN domain transfers RNA to GDP, and forms the core cap structure GpppA-RNA.[ARBA:ARBA00043918] | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Swine acute diarrhea syndrome coronavirus]] | |||
[[Category: Lei J]] | |||
[[Category: Zeng R]] | |||
Latest revision as of 07:26, 18 February 2026
Crystal structure of SADS-CoV main protease (Lys35Val)
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