Riboswitch 3D structures: Difference between revisions
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**[[6lau]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAH<br /> | **[[6lau]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAH<br /> | ||
**[[7eaf]] – CsSAMR + SAM – ''Caldanaerobacter subterraneus''<br /> | **[[7eaf]] – CsSAMR + SAM – ''Caldanaerobacter subterraneus''<br /> | ||
* S-adenosylhomocysteine riboswitch or SAH riboswitch | |||
S-adenosylhomocysteine riboswitch or SAH riboswitch | |||
**[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum'' | **[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum'' | ||
**[[6hag]] - SAMR + SAH – ''proteobacteria'' - NMR<br /> | **[[6hag]] - SAMR + SAH – ''proteobacteria'' - NMR<br /> | ||
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**[[2miy]] – Preq1 + guanine derivative – ''Streptococcus pneumoniae'' - NMR<br /> | **[[2miy]] – Preq1 + guanine derivative – ''Streptococcus pneumoniae'' - NMR<br /> | ||
**[[8fza]] – EcPreq1 III <br /> | **[[8fza]] – EcPreq1 III <br /> | ||
**[[2l1v]] – EcPreq1 I + PreQ1 - NMR <br /> | **[[2l1v]] – EcPreq1 I + PreQ1 - NMR <br /><br>C-di-GMP riboswitch | ||
C-di-GMP riboswitch | |||
**[[3ucu]], [[3ucz]] – hGMPR + GpG <br /> | **[[3ucu]], [[3ucz]] – hGMPR + GpG <br /> | ||
**[[3ud3]], [[3ud4]] – hGMPR + GpA <br /> | **[[3ud3]], [[3ud4]] – hGMPR + GpA <br /> | ||
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**[[7wie]] – MlTHFR + 7DG<br /> | **[[7wie]] – MlTHFR + 7DG<br /> | ||
**[[7wii]] – MlTHFR + NPR<br /> | **[[7wii]] – MlTHFR + NPR<br /> | ||
**[[7wif]] – MlTHFR + H4B<br /> | **[[7wif]] – MlTHFR + H4B<br /><br> <br>Fluoride riboswitch | ||
* [[3vrs]] – TpFR + Mn + K + F – ''Thermotoga petrophila''<br /> | |||
Fluoride riboswitch | * [[4en5]] – TpFR + Mg + Tl + F <br /> | ||
* [[4enc]] – TpFR + Mg + K + F <br /> | |||
[[3vrs]] – TpFR + Mn + K + F – ''Thermotoga petrophila''<br /> | * [[4ena]] – TpFR + Mg + Cs + GTP + F <br /> | ||
[[4en5]] – TpFR + Mg + Tl + F <br /> | * [[4enb]] – TpFR + Mg + Ir + K + GTP + F <br /> | ||
[[4enc]] – TpFR + Mg + K + F <br /> | |||
[[4ena]] – TpFR + Mg + Cs + GTP + F <br /> | |||
[[4enb]] – TpFR + Mg + Ir + K + GTP + F <br /> | |||
*Manganese riboswitch | *Manganese riboswitch | ||
**[[6n2v]] – MnR + Mn – ''Xanthomonas oryzae''<br /> | **[[6n2v]] – MnR + Mn – ''Xanthomonas oryzae''<br /> | ||
*Cobalamine riboswitch | *Cobalamine riboswitch | ||
* [[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – Marine metagenome<br /> | |||
[[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – Marine metagenome<br /> | |||
**[[6vmy]], [[8fw4]] – BsCoR <br /> | **[[6vmy]], [[8fw4]] – BsCoR <br /> | ||
**[[8sa2]], [[8sa3]], [[8sa4]], [[8sa5]], [[8sa6]] – BsCoR – Cryo EM<br /> | **[[8sa2]], [[8sa3]], [[8sa4]], [[8sa5]], [[8sa6]] – BsCoR – Cryo EM<br /> | ||
*YdaO riboswitch | *YdaO riboswitch | ||
**[[6n5k]], [[6n5n]], [[6n5o]], [[6n5p]], [[6n5q]], [[6n5s]], [[6n5t]], [[6wtl]], [[6wtr]] – hYdaO/mRNA <br /> | **[[6n5k]], [[6n5n]], [[6n5o]], [[6n5p]], [[6n5q]], [[6n5s]], [[6n5t]], [[6wtl]], [[6wtr]] – hYdaO/mRNA <br /> | ||
* yybp-ykoy riboswitch | * yybp-ykoy riboswitch | ||
**[[4y1i]] – LlYYR + Mn – ''Lactobacillus lactis''<br /> | **[[4y1i]] – LlYYR + Mn – ''Lactobacillus lactis''<br /> | ||
